I've encountered the same problem described below despite downloading the new
version posted on 26th May.
I downloaded freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0.dmg today from
http://www.freesurfer.net/fswiki/Download
I'm running Mac OS X version 10.6.7 (Intel)
On attempting to test t
Hi Mike
Sorry. Our OSX builds seem to pick up the dynamic libraries for a few
binaries during the build process. These things escape our internal
testing because the binaries work here.
We'll post a new build which takes care of this issue. This can be
just installed over the existing 5.1 v
Dear All,
After running recon-all I noticed wmparc.stats only contains wm volume and
there is no ctx volume and subcortical volumes.
Recon-all finished without any error.
Thanks
Ayaz
The information contained in this message and any attachments is intended only
for the use of the individu
Hi,
I would like to normalize the subcort.mask.mgz to MNI152 space. I have
attempted to use the command:
mri_vol2vol --mov $FREESURFER_HOME/subjects/
fsaverage/mri.2mm/subcort.mask.mgz
--targ $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz
--o ./subcort.mask152.nii
--reg $FREESURF
Hi All,
We've collected 2 MPRAGEs per subject for a study. This is on a
Siemens Tim Trio 3T with a 32-channel head coil, 1mm isotropic data.
The SNR looks pretty good as expected. I've read in the freesurfer
archive that it is not necessary to use two MPRAGEs with this high
quality data,
> Hello,
> I have a subject with very big ventricle. I managed to edit wm.mask and
> aseg.mgz, and rerun the recon-all autorecon2, but the middle line separating
> left/right ventricles is still not right (attached). Is there any way to
> correct it? I¹m using FS 5.1. Thanks.
>
> Wayne
>>
>
I've run some QA using 1 and 2, and there is not much of a difference. I
would systematically use the 1st one.
doug
Ariel Brown wrote:
> Hi All,
> We've collected 2 MPRAGEs per subject for a study. This is on a
> Siemens Tim Trio 3T with a 32-channel head coil, 1mm isotropic data.
> The SN
The cortical volumes are in ?h.aparc.stats. The subcort volumes are in
aseg.stats
doug
Ayaz, Muhammad wrote:
>
> Dear All,
>
>
>
> After running recon-all I noticed wmparc.stats only contains wm volume
> and there is no ctx volume and subcortical volumes.
>
>
>
> Recon-all finished without a
Eventhough they are both in "MNI" space, there is still a registration
that has to be applied. Try something like this:
mri_vol2vol --mov
$FREESURFER_HOME/subjects/fsaverage/mri.2mm/subcort.mask.mgz \
--targ $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \
--reg $FREESURFER_HOME/average/mni152.m
