Thanks for the suggestion, Doug. The only remaining issue is that I
don't know what to give tkregister2 as an initial registration file,
since there is no initial registration to be performed to match orig
with orig. What should I do? I tried
tkregister2 --s 2499 --mov orig.mgz --targ orig.m
Just use --regheader
Jordan Poppenk wrote:
> Thanks for the suggestion, Doug. The only remaining issue is that I
> don't know what to give tkregister2 as an initial registration file,
> since there is no initial registration to be performed to match orig
> with orig. What should I do? I tried
>
Dear freesurfer experts:
I am trying to extract roi from my fMRI data using func2roi-sess. However, I
encounter an error that I wonder might be a bug in the code? My input is
func2roi-sess -roidef l_lingual -analysis hrf -anatlabel lh.lingual
-maskcontrast AllvFix -maskthresh 0 -masktail pos -mas
Freesurfer gurus:
When using rebuild_gca_atlas.csh it fails due to the fact that not all
of the TRs TEs and FlipAngles are identical across all scans I am using
for the atlas. Is there any major concern if we artificially change
these values using mri_modify so that they are identical?
Much tha
Hi Jared,
are the contrast properties largely the same? If so you should be ok
Bruce
On Thu, 10 Dec 2009, Jared Price wrote:
> Freesurfer gurus:
> When using rebuild_gca_atlas.csh it fails due to the fact that not all
> of the TRs TEs and FlipAngles are identical across all scans I am using
> f
that is bizarre. What version of freesurfer and what operating system
are you using?
doug
John Richey wrote:
> Dear freesurfer experts:
>
> I am trying to extract roi from my fMRI data using func2roi-sess. However, I
> encounter an error that I wonder might be a bug in the code? My input is
> f
