that is bizarre. What version of freesurfer and what operating system are you using?
doug John Richey wrote: > Dear freesurfer experts: > > I am trying to extract roi from my fMRI data using func2roi-sess. However, I > encounter an error that I wonder might be a bug in the code? My input is > func2roi-sess -roidef l_lingual -analysis hrf -anatlabel lh.lingual > -maskcontrast AllvFix -maskthresh 0 -masktail pos -maskmap sig -sf > subjects.txt > > (the last 25 or so lines of the log are pasted below). Basically, I believe > that line in the log that reads: > > /fmcsm8= bold/007 > > should read: > > srcvol = bold/007/fmcsm8.nii > > The result is that the func2roi-sess routine terminates with the error > displayed on the last line: /fmcsm8. Does it exist?lume bold/007 > > Has anyone else encountered this problem? Or maybe I am skipping a step? I > am using v4.5.0. If it helps, I can also paste my source code that seems to > produce this error. Thanks in advance > > John Richey > > > -------------------------------------------------------- > /mnt/users/jar62/hill/data/Dichter/DotPro.01/Analysis/freesurfer/SAD_C17 > mri_vol2roi > --srcreg bold/register.dat --label > /home/jar62/net/hill/data/Dichter/DotPro.01/Analysis/freesurfer//SAD_C17/lab > el/lh.lingual.label --mskvol bold/dotprobe_all_hrf//AllvFix/sig.nii > --msksamesrc --mskthresh 0 --msktail pos --mskframe 0 --finalmskvol > bold/dotprobe_all_hrf/l_lingual/mask --roiavgtxt > bold/dotprobe_all_hrf/l_lingual/fmcs.txt07 > version $Id: mri_vol2roi.c,v 1.26.2.2 2008/04/02 22:28:56 greve Exp $ > -------------------------------------------------------- > roifile = bold/dotprobe_all_hrf/l_lingual/fmcsm8-007 > .txtxtfile = bold/dotprobe_all_hrf/l_lingual/fmcsm8-007 > oldtxtstyle = 0 > /fmcsm8= bold/007 > srcfmt = bvolume > srcreg = bold/register.dat > srcregold = 0 > srcwarp unspecified > label file = > /home/jar62/net/hill/data/Dichter/DotPro.01/Analysis/freesurfer//SAD_C17/lab > el/lh.lingual.label > labelreg unspecified > label fill thresh = 1e-07 > mskvol = bold/dotprobe_all_hrf//AllvFix/sig.nii > mskfmt unspecified > msk volume same as source > msk tail = pos > msk threshold = 0.000000 > msk invert = 0 > msk frame = 0 > /fmcsm8. Does it exist?lume bold/007 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
