Hello.
I am going to attempt to install FS on Ubuntu, but just had a quick question
before I start. On the Download page on the wiki site, it states the following:
On Ubuntu, you will need to do the following:
cd /usr/lib
ln -s libtiff.so.4 libtiff.so.3
When exactly does this need to be done?
Just do it before you try to run any of the FreeSurfer programs. What
issues are you having? I have FreeSurfer installed on a number of Ubuntu
machines.
Peace,
Matt.
_
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Ah
Hi Matt,
The problems I've been having with Freesurfer are endless lol. I can't figure
out how to get it installed on my CentOS Linux. The tar.gz extraction doesn't
work so I can't get it installed.
So, that command doesn't have to be used in installation? I am SO bad at Linux
it's unbelievable
Hi, there,
Could you tell me what I need to unpack to solve the "redraw fails" problem?
Thanks a lot!
Guang
> > if I recall correctly "the sliver problem" stems from the use of an
> > incompatible libGL. I did the following that a colleague found out:
> > add the following line to ${FREESUR
Ahmed, F, Me wrote:
>
> On Ubuntu, you will need to do the following:
> cd /usr/lib
> ln -s libtiff.so.4 libtiff.so.3
>
Actually, you should probably use:
sudo ln -s /usr/lib/libtiff.so.4 /usr/lib/lib/tiff.so.3
(it amounts to the same thing, but this way is just one line that you
can simpl
I assume you meant sudo ln -s /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Rudolph Pienaar
Sent: Monday, August 24, 2009 10:04 AM
To: Ahmed, F, Me
Cc: Freesurfer Mai
Matt Glasser wrote:
> I assume you meant sudo ln -s /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3
Yes - thanks!
--
Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301) 13th Street, Charlestown, MA 02129 USA
__
If you want p-values for the clusters, then you need to run a simulation
(mri_glmfit-sim). I think QDEC creates a script to do it.
doug
Rosa Steimke wrote:
> dear freesurfer experts. i have another problem in generating output useing
> mr_surfcluster command.
>
> i was wondering how to generat
Fatima,
The current release, v4.5.0, no longer requires performing the 'libtiff'
link.
What other issues are you encountering?
Nick
On Mon, 2009-08-24 at 12:20 +0200, Ahmed, F, Me wrote:
> Hello.
>
> I am going to attempt to install FS on Ubuntu, but just had a quick
> question before I start
I actually don't know if your information is out of data. I remember
years ago we did do some checking on it, and I thought it was accurate
(can't find my notes not it). If it is not accurate, I would like to
know. Alternatively, you can report mni305 coordinates.
doug
Matt Leonard wrote:
> Hi
2009/8/25 Feng-Xian Yan
> Hi,
>
>First, I use mri_surf2surf (as follows) to map our subjects to
> fsaverage.
>
> mri_surf2surf –srcsubject subject --sval-tal-xyz white --hemi lh
> --trgsubject fsaverage --tval-xyz --tval lh.subject.tal
>
>
>
> Next step, I use mris_convert to show the cortica
Dear all,
I am trying to compute the local gyrification index but unfortunately
encounter the problem below. Matlab Version ( R2007a) and also the Image
Processing Toolbox are installed on my computer (Ubuntu 9.04,32-bit).
I think the matlab isn't rightly called by the script. But the
"make_out
I just did a fresh install of 4.5.0 on a new machine with an "out of the box"
Ubuntu 9.04
You still need (at least):
* to create the symbolic link for libtiff
* to install the tcsh package (wich is not by default)
Hope this can help.
--
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