If you want p-values for the clusters, then you need to run a simulation (mri_glmfit-sim). I think QDEC creates a script to do it.
doug Rosa Steimke wrote: > dear freesurfer experts. i have another problem in generating output useing > mr_surfcluster command. > > i was wondering how to generate an output with the significant clusters from > my qdec analysis i learnd that i have to use the mri_surfcluster command and > use the sig.mgh file from my qdec. however i am very uncertain about how to > apply the explanation (from freesurfer wiki) of the mri_surfcluster commands > to the sig.mgh. i got the error message that the --sum command cannot be > used for the sig.mgh file and i dont understand whether i have to apply more > commands (besids thresholding, subjects and such) to generate the and output > that gives me the size, significant values and coordinates of each of the > clusters i can see in qdec. > > thanks for your help. rosa > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
