Dear List,
I am trying to install FreeSurfer on an iMac on which I am using Ubuntu
9.04 (jaunty).
I downloaded the CentOS 4x86_64-tar.gz file, moved it to '/usr/local/'
and unpacked it there ('tar xzvf ...'). I saved the .license-file in
'/usr/local/freesurfer'.
Trying for example 'mri_con
Wow running Ubuntu on iMac and FreeSurfer I never saw.
Did you set FREESURFER_HOME
Enviado do meu celular Nokia
-Msg original-
De: Lucas Eggert
Enviada: 05/06/2009 09:20:25
Para: freesurfer@nmr.mgh.harvard.edu
Assunto: [Freesurfer] Installing FreeSurfer on iMac running Xubuntu
Dear Lis
Hi,
Wow running Ubuntu on iMac and FreeSurfer I never saw.
Did you set FREESURFER_HOME
'echo $FREESURFER_HOME' gives - as it should:
'/usr/local/freesurfer'
-Lucas
Enviado do meu celular Nokia
-Msg original-
De: Lucas Eggert
Enviada: 05/06/2009 09:20:25
Para: freesurfer@nmr.mgh.
Can you send the output of uname -a command
Enviado do meu celular Nokia
-Msg original-
De: Lucas Eggert
Enviada: 05/06/2009 09:56:12
Para: p...@netfilter.com.br
Cc: freesurfer@nmr.mgh.harvard.edu
Assunto: Re: RES: [Freesurfer] Installing FreeSurfer on iMac running Xubuntu
Hi,
> Wow run
Sure:
Linux pc-15-301-1 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59
UTC 2009 i686 GNU/Linux
-Lucas
Can you send the output of uname -a command
Enviado do meu celular Nokia
-Msg original-
De: Lucas Eggert
Enviada: 05/06/2009 09:56:12
Para: p...@netfilter.com.br
Cc: freesurfe
I think you are running a 64 bit version of FreeSurfer in a 32bit linux Kernel.
Try using FreeSurfer 32bit
Enviado do meu celular Nokia
-Msg original-
De: Lucas Eggert
Enviada: 05/06/2009 10:08:40
Para: p...@netfilter.com.br
Cc: freesurfer@nmr.mgh.harvard.edu
Assunto: Re: RES: Re: [Fr
Hi,
Try using FreeSurfer 32bit
That's it!
Thank you very much for your quick help!
-Lucas
Enviado do meu celular Nokia
-Msg original-
De: Lucas Eggert
Enviada: 05/06/2009 10:08:40
Para: p...@netfilter.com.br
Cc: freesurfer@nmr.mgh.harvard.edu
Assunto: Re: RES: Re: [Freesurfer] I
Hi,
I'm playing around with different ways of generating custom annotation files
using the fsaverage surface, and would like to estimate the surface area of
each ROI. I tried running mris_anatomical stats, but it seems to required
wm.mgz, which is not contained in the fsaverage directories (please
Hi Alex,
if all you care about is surface area you can probably just copy the
wm.mgz from any subject into the fsaverage/mri dir. Other stats will of
course then be incorrect. You also have to be careful as the fsaverage
surfaces contain less surface area (due to averaging) than individual
su
I'd like to extract a BOLD series for a given anatomical region. It seems
like this should be possible with func2roi-sess (with the -anatlabel option)
but it appears to need an analysis for some reason. I'm using continuous
data, no event-related or block design paradigm, so I don't have an FS-FA
Never mind. I solved my own problem using mri_vol2roi.
On Fri, Jun 5, 2009 at 2:29 PM, Alessandro D. Gagliardi <
ekly...@psychology.rutgers.edu> wrote:
> I'd like to extract a BOLD series for a given anatomical region. It seems
> like this should be possible with func2roi-sess (with the -anatlab
e.txt -log
> logfile.txt fsaverage lh white
> computing statistics for each annotation in lh.test.aparc.annot
> outputting results to logfile.txt...
> reading volume /work/imaging5/af397/twins/fsaverage/mri/wm.mgz...
> ERROR: cannot find /work/imaging5/af397/twins/fsaverage/mri/wm.m
When we run v430 on our cluster, running rocks redhat 4.3, we get the error
message below when mris_volmask is run. From a google search, I see that
someone had the same error message back in Oct 2007. Was a solution found for
this? It runs fine on our desktop machines as well as when we log
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