Re: [Freesurfer] ROIs of BV not coinciding with FS

2009-04-11 Thread Barnali Basu
Thanks Brian for the quick response. I have not generated labels in FS, I am trying to bring BV generated ROIs onto Freesurfer and make them coincide( for that, I understand both FS and BV have to be in same space). The BV Roi was generated in TAL. As far as I understand, trying to open TAL ROIs i

Re: [Freesurfer] 3D visualization of subcortical volumes

2009-04-11 Thread ox...@yahoo.com
try the slicer software. there are options to do what you want directly with FS data --- On Tue, 3/17/09, Douglas N Greve wrote: From: Douglas N Greve Subject: Re: [Freesurfer] 3D visualization of subcortical volumes To: "Alexa Nardelli" Cc: freesurfer@nmr.mgh.harvard.edu Date: Tuesday, March

Re: [Freesurfer] ROIs of BV not coinciding with FS

2009-04-11 Thread Bruce Fischl
Hi Barnali, we never resample into tal coords, which is why you need to generate the ROIs in native RAS space. cheers, Bruce On Sat, 11 Apr 2009, Barnali Basu wrote: Thanks Brian for the quick response. I have not generated labels in FS, I am trying to bring BV generated ROIs onto Freesurfe