Dear freesurfers
im trying to obtain the wm volume for some ROIs created by myself, ando that
not fit with the parcellation of FS, i'm using mri_segstats but i can't make it
work, can any of you help me?
i always recibe a message that says:
"in Get MAC Adress (internal) : There was a conf
Hi,
I am trying to modify the colour map of an overlay in tksurfer.
Unfortunately, the changes I make to the View -> Configure -> Overlay
tcl/tk control are either ignored, or end in errors.
For example, if I left click on the histogram to set the lower
thresh hold, and then click 'c
did you try right-clicking to set the upper threshold?
On Mon, 6 Apr 2009,
Lloyd Elliott wrote:
Hi,
I am trying to modify the colour map of an overlay in tksurfer.
Unfortunately, the changes I make to the View -> Configure -> Overlay tcl/tk
control are either ignored, or end in errors.
Hi Nick,
I tried using your modified recon-all today but as soon as I try to process any
data I receive following error message:
'nknown option: `-
Usage: tcsh [ -bcdefilmnqstvVxX ] [argument ...].
Also it doesn't matter at all which flags I add to recon-all or if I don't use
any flags at all,
Yes, I did try right clicking to set the upper threshold. When I
left click, or right click, the respective bar moves, but the colour
map remains unchanged. When I click "copy settings to layer" the bars
almost always reset. I've managed to make them not reset at least
once, but the c
The problem is that the Apply Close and Help button controls don't
appear on the mac because the window is too long (MacBook laptops have
a maximum resolution of 1280x800) (I didn't realise there was such a
button because the beveling behind the rest of the controls makes it
look like the
no problem. The space bar is bound to the "apply" button, which should do
the trick for you
On Mon, 6 Apr 2009, Lloyd Elliott wrote:
The problem is that the Apply Close and Help button controls don't appear
on the mac because the window is too long (MacBook laptops have a maximum
resolution o
Falk, it looks like that file was somehow converted to DOS. try:
dos2unix recon-all
chmod a+x recon-all
then re-run
doug
On Mon, 6 Apr 2009, Falk Lüsebrink wrote:
Hi Nick,
I tried using your modified recon-all today but as soon as I try to process any
data I receive following error mess
This looks like a problem we had with an older version. What version of
freesurfer are you running?
Martin Kavec wrote:
Hi,
I am trying to mask a non-brain tissue left by watershed based on the cortical
surfaces. I found that all what I need to be left is in aparc+aseg.mgz, so I
converted it
what's your command line?
Gabriel Go.Es. wrote:
Dear freesurfers
im trying to obtain the wm volume for some ROIs created by myself,
ando that not fit with the parcellation of FS, i'm using mri_segstats
but i can't make it work, can any of you help me?
i always recibe a message that says:
Hi Dough,
this data were analyzed using 4.0.4. So indeed it not the latest, which I am
running normally. From which version has this been fixed, so I can check,
before re-runing. From which point should I rerun the analysis.
Thanks,
Martin
On Monday 06 April 2009 18:42:36 Douglas N Greve wrot
Hi, just a quick question...
We get this error:
register_mri: find_optimal_transform
find_optimal_transform: nsamples 3481, passno 0, spacing 8
GCAhistoScaleImageIntensities: could not find wm peak
resetting wm mean[0]: 117 --> 126
resetting gm mean[0]: 74 --> 74
input volume #1 is the most T1-li
I thought it was 4.0.3, so maybe that's not it. Can you look at the
ribbon.mgz file? You can load it as a segmentation, ie,
tkmedit subject orig.mgz -seg ribbon.mgz
aparc+aseg is suppossed to inherit the cortex from ribbon.mgz
doug
On Mon, 6 Apr 2009, Martin Kavec wrote:
Hi Dough,
this
Doug,
ribbon (aparc+aseg) looks perfect, and corresponds to the surfaces ?h.white.
Thanks,
Martin
On Monday 06 April 2009 22:17:18 Doug Greve wrote:
> I thought it was 4.0.3, so maybe that's not it. Can you look at the
> ribbon.mgz file? You can load it as a segmentation, ie,
>
> tkmedit subjec
but you are using aparc+aseg to generate the mask, so if aparc+aseg is
perfect, the mask should be as well. Do the mask and aparc+aseg match?
On Mon, 6 Apr 2009, Martin Kavec wrote:
Doug,
ribbon (aparc+aseg) looks perfect, and corresponds to the surfaces ?h.white.
Thanks,
Martin
On Monda
Thank you for the advice Sid. I added those lines, and now my errors
disappear, but I still get a blank screen where there should be a scatterplot.
Is this a graphics issue with my hardware, or do I need to do something
differently?
This is my fsgd file:
GroupDescriptorFile 1
Title try1
Meas
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