[Freesurfer] recon error

2008-08-10 Thread Ilana Hairston
Hi there, I am new to free surfer, and am trying to analyse brains of kids ages 8-11. running recon1 i get the following error message: ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0., pval=0. < threshold=0.0050) Looking at past mailings seems you re

Re: [Freesurfer] recon error

2008-08-10 Thread Nick Schmansky
Ilana, use: tkregister2 --s (subjid) --fstal note that the talairach alignment can fail for a number of reasons. a catastrophic one would be if the direction cosines in the input file are all wrong (coronal, saggital, horizontal wrong). or it could be that the subject was just scanned in an