Hi Doug,
When i run
selxavg3-sess -analysis LD-analysis -s LD-functional
i seem to get errors in some other files, The output is as follows:
[balaji-goparajus-computer:~/Desktop/subjectdata] balajigo% selxavg3-sess
-analysis LD-analysis -s LD-functional
--
Hi,
I was wondering if anyone can tell me how to make permissions read out as
group executable, basically I would like to make it so my data files can be
worked with by others in my group.
Thanks for your help,
Jake
___
Freesurfer mailing list
Freesu
chmod -R g+rw $SUBJECTS_DIR
and you may need to change the group with chgrp as well.
cheers,
Bruce
On Fri, 8 Aug 2008, John Kuster wrote:
Hi,
I was wondering if anyone can tell me how to make permissions read out as
group executable, basically I would like to make it so my data files can be
-- Forwarded message --
From: Daniel H Choi <[EMAIL PROTECTED]>
Date: Fri, Aug 8, 2008 at 11:10 AM
Subject: Re: [Freesurfer] editing masks
To: Bruce Fischl <[EMAIL PROTECTED]>
Hi all,
I was wondering how to edit the voxels of a mask (the name of which is
"lh.stg.mask.mgz") so that
You will probably need to add "X" to the perms
chmod -R g+rwX $SUBJECTS_DIR
Bruce Fischl wrote:
chmod -R g+rw $SUBJECTS_DIR
and you may need to change the group with chgrp as well.
cheers,
Bruce
On Fri, 8 Aug 2008, John Kuster wrote:
Hi,
I was wondering if anyone can tell me how to mak
Hi all,
I get this error for one subject: mri_watershed Error:
GLOBAL region of the brain empty !
I check the talairach transformation and it looked good. I also tried
just scripting the orig.mgz and I get a wonderful strip. How can I move
forward with the recon-all process?
Thanks,
Vina
__
Hi All,
we have just been alerted to a bug in the longitudinal processing stream
that will require re-analysis of any longitudinal data. Sorry, we'll have a
fix sometime in the next couple of weeks, but for the moment you should
hold off analyzing any longitudinal data. We'll keep you posted.
hmmm, that's interesting. If you send us the data we'll take a look. In
any case, you can run, if you create an orig_stripped.mgz you can run:
mri_mask T1.mgz orig_stripped.mgz brain.mgz
then you should be able to run from after the skull stripping forward
(check the recon-all help. You'll ne
Did you explicitly check the quality of talairach_with_skull.lta?
Also, what version of FS are you using?
We previously had encountered that error in 5 brains processed under FS
4.0.2, and all five of those had errant talairach_with_skull.lta
transforms. Generation of talairach_with_skull.lta wa
