Dear All,
while being no exert, I assume the following:
in spatialsmooth-sess from freesurfer 4.0.5, line 160, there is the
following test:
test $infunc -nt $outfunc
This is used to skip processing if -update is specified, the test
evaluates to 1 if $infunc exists and is older than $outfunc
Dear FreeSurfers
I use the command: and want to mark a point at special Talairach coordinates at this
brain. When I type in the coordinates e.g. -46 -19 8 and press RETURN the the
Numbers change to e.g.
-46 -92 15. I dont found a possibility to mark the talairach coordinates I
want. Can yo
Hi,
I copied the new version of the programs
mktemplate-sess
surfsmooth-sess
stc-sess
mkbrainmask-sess
mc-sess
When i try to run preproc-sess -s LD-functional -fwhm 5 again, I get the
following error,
--
preproc-sess logfile is log/prep
Iris,
I think this bug was fixed in v4.0.3. We can also just post tkmedit for
you to download if you tell me your distribution, ie, type:
cat $FREESURFER_HOME/build-stamp.txt
Nick
On Tue, 2008-07-22 at 09:47 -0400, Bruce Fischl wrote:
> Hi Iris,
>
> what version are you using? I tracked down
That's strange. Is the file corrupted? Can you send the mc-sess back to me?
Balaji Goparaju wrote:
Hi,
I copied the new version of the programs
mktemplate-sess
surfsmooth-sess
stc-sess
mkbrainmask-sess
mc-sess
When i try to run preproc-sess -s LD-functional -fwhm 5 again, I get
the follow
Hello,
I have some basic questions regarding some Freesurfer reconstructions
that I've made on a set of infant brains (12-15month olds). Overall,
the reconstructions have been successful. The exception being that
the gray matter of the anterior temporal lobes are being
underestimated,
Hi Katie,
I don't have a lot of experience in that age range but... are you talking
about the wm.mgz or the ?h.white in terms of accuracy? You should use the
latter, as the wm.mgz is just an initial estimate that gets refined. If
it's unmyelinated white matter control points are probably not t
Hi,
Thank you for the help. I saved it as a plain text. and it did not give me
that error again.
However, even after I saved the new version of the mkbrainmask-sess, i get
the same error.
Tue Jul 22 14:32:30 EDT 2008
/Users/balajigoparaju/Desktop/subjectdata
mkbrainmask-sess -maskstem brain -fsd
Actually, the construction of aparc+aseg and wmparc do use info about
where the surface is to refine the aseg cortical boundaries. This
information is stored in ribbon.mgz (and it overrides the aseg
definition). At some point, we will use the surfaces to directly refine
the aseg boundaries.
We ran several subjects using version 4.0.4 and now need to reinstall
freesurfer to finish the processing. Is there a linux centos4, 32 bit version
available somewhere?
Thanks,
Tricia Merkley
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