Re: [Freesurfer] Interactions for continuous variables

2008-04-11 Thread Jerry Yeou-Wei Chen
That was the problem! Thanks! - Jerry On Thu, Apr 10, 2008 at 5:55 PM, Doug Greve <[EMAIL PROTECTED]> wrote: > I think the problem is that the last line is a blank line. Remove that > and retry. > > doug > > Jerry Yeou-Wei Chen wrote: > > I am getting the following error when I run mri_glmfit wi

[Freesurfer] tksurfer buttons grayed out

2008-04-11 Thread hranilovich
We're taking a look at using FreeSurfer for our lab's analysis of cortical thickness...just ran a fully automated recon-all on one of our lab's brains that generated no error messages and looks good in the "Inspection of Freesurfer Output" exercise from your tutorial. However, I noticed wh

Re: [Freesurfer] tksurfer buttons grayed out

2008-04-11 Thread Bruce Fischl
Hi Jennifer, did you try loading them with file->... (curvature for thickness and surface configuration for pial). You can also ctrl-right click on either one to bring up the appropriate file menu. We don't load them by default I don't think. Bruce On Fri, 11 Apr 2008 [EMAIL PROTECTED] w

[Freesurfer] converting a region defined by a surface to a label file

2008-04-11 Thread Michael Harms
Hello, We have some white matter surfaces created using non-FS software in which we have subsequently "cut-out" via hand contouring specific gyri and sulci of interest (e.g., cingulate). I would like to be able to use these extracted surfaces to create a label file in FS corresponding to the mat