Hi Jurgen,
the same happens here. The reason for that is that guys pointed the link on
the webpage to an nonexisting file. The file uploaded on the server is called
freesurfer-Darwin-leopard-i686-stable-pub-v4.0.3-full.dmg while the webpage
refers to freesurfer-Darwin-tiger-i686-stable-pub-v4.0
Sorry,
misspelled harvard in the link. ;)
This should work better.
ftp://surfer.nmr.mgh.harvard.edu/pub/dist
Martin
On Tuesday 01 April 2008 11:19:16 Martin Kavec wrote:
> Hi Jurgen,
>
> the same happens here. The reason for that is that guys pointed the link on
> the webpage to an nonexisting
Hi Shriks,
use read_label.m after you've converted to a label (or use mris_convert to
convert to an ascii surface and use your own reading utility - I don't
think we have one).Or use read_patch.m in the native patch format.
cheers,
Bruce
On Tue, 1 Apr 2008, SHRIKANTH KULASHEKHAR wrote:
Hi,
Juergen,
The site is fixed now. The filename had 'tiger' in it instead of
'leopard'. For the Mac, freesurfer is now built on the Leopard OS.
A build for the Tiger OS for the PowerPC is available if anybody
requests it. A build for the Tiger OS for the Intel Mac is not
available.
Nick
On Tu
Hi,
I have been trying to plot flattened cortex surfaces using MATLAB but have been
unsuccessful so far.
After flattening the cortex in freesurfer, I convert in into an ascii file by
using: mris_convert -p label1.flat label1.flat.asc
But then fail to read the *.asc file as a patch in MATLAB us
Cameron Ellis wrote:
Hi all,
Is it necessary to include a value in your contrast matrix for every class
and variable in your fsgd file?
Yes, you have to have a value in the contrast matrix for each regressor
in the design matrix.
It seems that this is the case. My
understanding is that i
Hello All-
When viewing the scalar overlays in qdec, how do I tell which
coefficient is being displayed when I select "Regression Coefficients"
from the menu? Having more than one regressor, I would expect more than
one overlay of coefficients. Am I missing something very elementary?
--
---
Hello All,
I have a library problem when I run recon-all. Recon-all exits with
ERROR during the cortribbon step. I am using FC8 x86_64 OS on an Intel
Xeon 64 bit machine. I have installed CentOS4-x86_64-v4.0.2 version of
freesurfer. The library in question "libexpat.so.0" has been installed
and is
Hello All,
I have a library problem when I run recon-all. Recon-all exits with
ERROR during the cortribbon step. I am using FC8 x86_64 OS on an Intel
Xeon 64 bit machine. I have installed CentOS4-x86_64-v4.0.2 version of
freesurfer. The library in question "libexpat.so.0" has been installed
and is
Does the website contain a list of structures labeled in both version
3 and version 4? I am looking for both cortical and subcortical
segmentation labels.
Thanks,
Lindsay
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Lindsay,
If you do
cd $FREESURFER_HOME
You'll find the FreeSurferColorLUT.txt there which has all the labels for
cortical and subcortical structures.
Allison
On Tue, 1 Apr 2008, Lindsay Casmaer wrote:
Does the website contain a list of structures labeled in both version
3 and version 4? I a
Hi,
I have been running analyses in qdec and glmfit and comparing the results.
I am puzzled by the results of one analysis that compares two groups. When
I loaded a table.dat file in qdec and selected the variables of interest,
an fsgd file containing only those variables was generated in the
analy
The values in the mgh file should be -log10(abs(CWP)). Would that
explain the discrepancy?
James N Porter wrote:
Hello-
When I look at the CWP results of mri_surfcluster in the
sig.cluster.sum versus the resultant sig.cluster.mgh, the results are
different. Specifically, all clusters negati
Jim,
You are not missing something elementary, in fact, you have found an
elementary problem in qdec that was overlooked until now.
The 'Regression Coefficient' scalar display is the file beta.mgh found
in your results directory (ie qdec/Untitled, usually). That file
contains a frame of data for
Dhruman,
Try typing:
ldd $FREESURFER_HOME/bin/mris_volmask.bin
and look for the libexpat that it expects. libexpat needs to be in that
directory. On 64bit Centos, it is looking for it in /usr/lib64,
not /usr/lib. You could just make a symlink to the /usr/lib64 dir for
that lib.
Nick
On Tue
Yep. That would explain it. Thanks!
-
Jim Porter
Graduate Student
Clinical Science & Psychopathology Research
University of Minnesota
Doug Greve wrote:
The values in the mgh file should be -log10(abs(CWP)). Would that
explain the discrepancy?
James N Porter wrote:
Hello-
When I
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Hi!I would like to know the version of Freesurfe
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