[Freesurfer] Label boundary

2008-03-28 Thread SHRIKANTH KULASHEKHAR
Hi, Is there any freesurfer utility to isolate/plot the vertices that form the boundary of any label ? If no, how can one go about doing this ? Thank you. Shriks Forgot the famous last words? Access your message archive online at http://in.messenger.yahoo.com/webmessengerpromo.php___

Re: [Freesurfer] Label boundary

2008-03-28 Thread Bruce Fischl
Hi Shriks, tksurfer can do this by clicking the label outline button. Is that what you mean? The boundary is just the set of points that are in the label that nbr points not in the label. cheers, Bruce On Fri, 28 Mar 2008, SHRIKANTH KULASHEKHAR wrote: Hi, Is there any freesurfer utility

Re: [Freesurfer] purpose of creating own "average subject"

2008-03-28 Thread Michael Harms
Good points! I (partly) see the light :) Still (please correct me if I'm wrong), creating a study specific average subject for visualizing the "average" anatomy doesn't address the issue of whether the method by which those subjects were brought into register (i.e., via sphere.reg using a term i

[Freesurfer] Error

2008-03-28 Thread jake
Hi, We are getting an error where our preprocessing step seems to be failing, any help would be greatly appreciated, thank you! *running from the following directory /autofs/homes/014/jake/AnalysisPrograms *using the following command (which sources /usr/local/freesurfer/nmr-stable3-env) stria

[Fwd: Re: [Freesurfer] Error]

2008-03-28 Thread jake
Hi, Thanks for the bugr command. Here is my information, Thank you! Please include the following additional information in your report: 1) subject name: CD_aftbotox_ctrl5 2) the entire command-line executed csh CD_aftbotox_ctrl5_ContrastAnalysis.csh 3) the error message generated

Re: [Fwd: Re: [Freesurfer] Error]

2008-03-28 Thread jake
I apologize, the csh file is located in the home directory, /homes/14/jake/AnalysisPrograms Thanks > Hi, > > Thanks for the bugr command. Here is my information, Thank you! > > > Please include the following additional information in your report: > > 1) subject name: > > CD_aftbotox_ctrl5 >