Mike,
This qdec error results from a slightly out-of-date tcl script (an
oversight on my part when I updated qdec for v4.0.2). Attached to this
email is the file fsgdfPlot.tcl, which contains the function
FsdgfPlot_IsWindowShowing, and should be copied to
$FREESURFER_HOME/lib/tcl (overwriting the
Not sure what's going on. Did you really collect 79 runs? Was there more
than one time point in the 79th run? There is a button on the Siemens
console that causes each time point of each series to be saved as
separate series. If you checked this button, then you'll have to unpack
each time poin
Baham,
You can use mri_concat to combine all the frames into one file. That
is, first use mri_convert as you have done to create the ###.nii.gz
files for each frame, then:
mri_concat --i 001.nii.gz 002.nii.gz 003.nii.gz (etc..) \
--o session.nii.gz
will concatenate the frames into on
Hello,
When using the "Multiple Orientations" display of tkmedit with the
'Select voxels tool' mode of operation, the centering of the images
seems to "jump" around as I change the focus (i.e., green outlined
quadrant) using a left click, and the cross-hair ends up at a location
other than where
Jiefeng Jiang,
I can't say I have seen that problem, but we use libtiff.so.3 here, so
you may want to try installing that version of libtiff, rather than
linking libtiff.so.4 to libtiff.so.3 (if I understand correctly, you
have libtiff.so.4).
Nick
ps. I did find this message by googling the erro
This is a problem when it attempts to create an "average" aseg. As a
stop-gap measure, I've created a new version that will not stop the
execution if this stage fails. You can get it from here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_volume
doug
Juergen H
