Hello all,I get the following error when I feed in a dicom file into recon-all. The dicom file is in a directory with 159 other dcm files. Can you please tell me how to rectify this or what the source of the error is.
[EMAIL PROTECTED] freesurfer]# recon-all -i /root/Cath/ADULT\ 14-0005-0001-0001.d
Anil,
To see exactly where in the script the error occurs, append this to the
end of your recon-all command:
--debug --dontrun
If I had to guess, it looks like the '\ ' (slash-space) portion of the
input is causing problems. You may want to delete the space in the
filenames and see what happe
Anil,
It does seem that the recon-all script does not handle input files
containing spaces. However, you can fix your recon-all script by
editing it and replacing the 'case "-i"' section with this:
case "-i"
if( $#argv < 1) goto arg1err;
set InputVol = "$argv[1]"; shift;
if
Intel Mac owners,
A distribution of Freesurfer is now available for the new Intel-
processor Macs. It can be downloaded here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/
Look for the file:
freesurfer-Darwin-apple-i686-dev3-20061004.tar.gz
To install it, copy it to /Applications, and then:
