Anil, To see exactly where in the script the error occurs, append this to the end of your recon-all command:
--debug --dontrun If I had to guess, it looks like the '\ ' (slash-space) portion of the input is causing problems. You may want to delete the space in the filenames and see what happens. In the meantime, I'll see if I can recreate and fix this. Nick On Fri, 2006-10-06 at 16:25 -0500, Anil Roy wrote: > Hello all, > > I get the following error when I feed in a dicom file into recon-all. > The dicom file is in a directory with 159 other dcm files. Can you > please tell me how to rectify this or what the source of the error > is. > > [EMAIL PROTECTED] freesurfer]# recon-all -i /root/Cath/ADULT\ > 14-0005-0001-0001.dcm -subjid E001 -sd /usr/local/freesurfer/subjects > -all > set: Variable name must begin with a letter. > > Thanks, > > Anil. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
