Darren,
The equivalent to parcellate_subject would be:
recon-all -s -cortparc -parcstats -cortparc2 -parcstats2
More info here, under autorecon3:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
Also, the surface labels are embedded in the parcellation atlas (so having
Simple_surfa
Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM
group analysis onto
inflated surfaces of the template brain. I succeeded to do so by
inflating the template provided
with SPM and using tkregister2 with the functional data.
Are there any recommendations for t
Although partially overlapping what you've done already the following SPM toolbox enables you to overlay your data on the SPM canonical brain (colin27), fsaverage or any other surface.Checkhttp://spmsurfrend.sourceforge.net/and for documentationhttp://spmsurfrend.sourceforge.net/Documentation/Docum
What is it exactly that you want to do? Surface-based group stat
analysis or just visualization?
doug
Thomas Stephan wrote:
Dear FSL list,
I would like to use freesurfer to render fMRI results obtained by SPM
group analysis onto
inflated surfaces of the template brain. I succeeded to do so
I was wondering if it is possible to queue up various subjects like if
the computers were going to be left for several days to run autorecon1
and 2 on a subject, and when that finishes move on to the next subject
etc. If it is not possible in freesurfer has anyone written a script
that I could use
you could write a simple script to do this, something like:
#!/bin/csh -f
foreach subject (subject1 subject2 subject3)
recon-all -s $subject -autorecon1 -autorecon2
end
doug
Jake Freimer wrote:
I was wondering if it is possible to queue up various subjects like if
the computers were goin
