Darren, The equivalent to parcellate_subject would be:
recon-all -s <subj> -cortparc -parcstats -cortparc2 -parcstats2 More info here, under autorecon3: http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable Also, the surface labels are embedded in the parcellation atlas (so having Simple_surface_labels_200X.txt is no longer necessary), and output in the subjects stats dir as a .ctab file. Nick > Hi Darren, > > we are you still using parcellate)_subject? It's old, old old. What > version > are you running? > > Bruce > > > On Mon, 24 Jul 2006, Darren > Weber wrote: > >> --[PinePGP]--------------------------------------------------[begin]-- >> --[PinePGP]----------------------------------------------------------- >> -----BEGIN PGP SIGNED MESSAGE----- >> Hash: SHA1 >> >> >> What is this error: >> >> >> endorphin.16> parcellate_subject ucsf_wa >> could not open translation file >> /home/dweber/freesurfer/home/Simple_surface_labels2002.txt >> mris_ca_label: could not read annotation file >> /home/dweber/freesurfer/home/Simple_surface_labels2002.txt... >> >> No such file or directory >> >> >> >> >> >> - -- >> >> Darren L. Weber, Ph.D. >> Postdoctoral Scholar >> >> Dynamic Neuroimaging Laboratory, >> UCSF Department of Radiology, >> 185 Berry Street, Suite 350, Box 0946, >> San Francisco, CA 94107, USA. >> >> Tel: +1 415 353-9444 >> Fax: +1 415 353-9421 >> www: http://dnl.ucsf.edu/users/dweber >> >> "To explicate the uses of the brain seems as difficult >> a task as to paint the soul, of which it is commonly >> said, that it understands all things but itself." >> Thomas Willis (The Anatomy of the Brain and Nerves, 1664) >> -----BEGIN PGP SIGNATURE----- >> Version: GnuPG v1.4.3 (GNU/Linux) >> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org >> >> iD8DBQFExVw6xaCYN7qs0v4RAkLUAJ9BNVQgy/oyu9I0BXu3oAdnce5kVACglRYJ >> F6VQxAqkmFwhRheo9pnztGc= >> =RANa >> -----END PGP SIGNATURE----- >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> PinePGP: Encryption backend encountered error. >> --[PinePGP]----------------------------------------------------[end]-- >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
