Thanks! I don't have mri_binarize though. Is it included in 3.0.3? I
am currently running stable 3.0.1
>>> Doug Greve <[EMAIL PROTECTED]> 7/17/2006 7:14 pm >>>
One way to do it is with mri_binarize:
mri_binarize --i aseg.mgz --min 1.5 --max 2.5 --o wm-lh.mask.nii
This will find all the voxel
It is relatively new. You can get it from:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_binarize
doug
On Tue, 18 Jul 2006, Sasha Wolosin wrote:
Thanks! I don't have mri_binarize though. Is it included in 3.0.3? I
am currently running stable 3.0.1
Doug Greve <[EMA
thanks.
Regarding subcortical segmentation in general, if I am using a Philips
scanner should I be using the flag -cross-sequence when calling
mri_ca_label?
>>> Doug Greve <[EMAIL PROTECTED]> 7/18/2006 10:54 am >>>
It is relatively new. You can get it from:
ftp://surfer.nmr.mgh.harvard.edu/tra
no, you should use -align (which I think is the default now)
On Tue, 18 Jul
2006, Sasha Wolosin wrote:
thanks.
Regarding subcortical segmentation in general, if I am using a Philips
scanner should I be using the flag -cross-sequence when calling
mri_ca_label?
Doug Greve <[EMAIL PROTECTED]> 7
I ran two brains through autorecon2 and the pial line is drawn too
close at many parts and cuts off parts of the brain. I looked through
the website and only saw instructions for how to remove stuff and make
the pial line smaller. I was wondering if there is a command I can run
to expand the pial
can you send a snapshot of what you mean? Make sure that it's not the
skull stripping removing things (look at the brainmask.mgz volume)
On Tue,
18 Jul 2006, Jake Freimer wrote:
I ran two brains through autorecon2 and the pial line is drawn too
close at many parts and cuts off parts of the bra
