Thanks! I don't have mri_binarize though. Is it included in 3.0.3? I am currently running stable 3.0.1
>>> Doug Greve <[EMAIL PROTECTED]> 7/17/2006 7:14 pm >>> One way to do it is with mri_binarize: mri_binarize --i aseg.mgz --min 1.5 --max 2.5 --o wm-lh.mask.nii This will find all the voxels whose value is between 1.5 and 2.5 and set them to 1 in the output. In this case, it will make a binary mask of the left cerebral white matter as that has a code of 2 (from FreeSurferColorLUT.txt). The output can be saved in any mri_convert output format (ie, mgh, mgz, analyze, nifti, etc). doug Sasha Wolosin wrote: >Dear all, > Does aseg save out masks of the various subcortical regions measured? > If so, is it possible to visualize and/or edit these in tkmedit/scuba, >or export them to an external format? >Thanks, >Sasha > > > >Disclaimer: >The materials in this e-mail are private and may contain Protected Health Information. Please note that e-mail is not necessarily confidential or secure. Your use of e-mail constitutes your acknowledgment of these confidentiality and security limitations. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution, or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this e-mail in error, please immediately notify the sender via telephone or return e-mail. >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
