[Freesurfer] mri_normalize -conform question

2006-06-25 Thread Sebastian Moeller
Hi List, as the subject line says I am having problems running mri_normalize (on suse 9.3 x86_64, freesurfer centos4 x86_64 3.0.2 release). When feeding in slightly unconformed volumes (like 1mm isotropic 256 by 256 by 256 of type 3 (float)) mri_normalize's "-conform" argument fails (fully un

Re: [Freesurfer] recon-all error

2006-06-25 Thread Anil Roy
I tried using the -all option but I'm still getting an error. It runs for about 15 secs. I tried it on a different brain too but the error still remains. # recon-all -i /root/Desktop/F200.mnc -subjid F200 -sd /usr/local/freesurfer/subjects -all I've attached the output to a text file. Any help is

Re: [Freesurfer] mri_normalize -conform question

2006-06-25 Thread Bruce Fischl
Hi Sebastian, why do you want to run mri_normalize on non-conformed volumes? It wasn't really built for it. Bruce On Sun, 25 Jun 2006, Sebastian Moeller wrote: Hi List, as the subject line says I am having problems running mri_normalize (on suse 9.3 x86_64, freesurfer centos4 x86_64 3.0.2

[Freesurfer] Re: Freesurfer Digest, Vol 28, Issue 32

2006-06-25 Thread Sebastian Moeller
Hi Anil, On 26. Jun 2006, at 00:08 Uhr, [EMAIL PROTECTED] wrote: Message: 8 Date: Sun, 25 Jun 2006 17:07:36 -0500 From: "Anil Roy" <[EMAIL PROTECTED]> Subject: Re: [Freesurfer] recon-all error To: freesurfer@nmr.mgh.harvard.edu Message-ID: <[EMAIL PROTECTED]> Content-Type: text/plain