[Freesurfer] autorecon2

2006-05-02 Thread anthony gallo
I was running autorecon2 and it did not finish.  The status.log file tells me that it is finished but the data does not appear in the surf folder (some of the lh data is there but no rh).  Here is the end of the log file..does that help?  I tried to run autorecon3 and that was the "new invocati

Re: [Freesurfer] autorecon2

2006-05-02 Thread Bruce Fischl
Hi Anthony, it says that it finsiehd with errors. Can you see what the error was in the log file? Bruce On Tue, 2 May 2006, anthony gallo wrote: I was running autorecon2 and it did not finish. The status.log file tells me that it is finished but the data does not appear in the surf fold

Re: [Freesurfer] Re: MINC toolkit

2006-05-02 Thread Jane Aspell
Hi After having major hard drive problems i've lost the minc tools that i had installed at /usr/pubsw/packages/mni/current/lib so i need to download the minc tools again. I've been trying to download them from: https://surfer.nmr.mgh.harvard.edu/fswiki/MiscellaneousDownloads but when i click on

Re: [Freesurfer] Re: MINC toolkit

2006-05-02 Thread Dennis Jen
Hi Jane, Try: https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/rh9/mni-1.4_rh9.tar.gz I'll go ahead and fix those links. Thanks, Dennis Jane Aspell wrote: Hi After having major hard drive problems i've lost the minc tools that i had installed at /usr/pubsw/packages/

[Freesurfer] Results files

2006-05-02 Thread Bagnato, Francesca (NIH/NINDS) [E]
Dear All: I am using the last relaease of freesurefr and I am uncertain about the '.aparc.stats' file. Precisly: differences between this file and the '.aparc.a2005s.stats' and '.aparc.stats' are not clear. Does the latter selecet dome of the cortical regions form the first one? If so, avg thick o

Re: [Freesurfer] Results files

2006-05-02 Thread Jenni Pacheco
Hi Francesca, Freesurfer now runs two parcellations, by default. One (?h.aparc.annot) uses the Desikan-Killiany atlas and the other (?h.aparc.a2005s.annot) uses Christophe's atlas. The two stat files are the different statistical outputs that come from each of the different atlases. Jenni

Re: [Freesurfer] Re: MINC toolkit

2006-05-02 Thread Nick Schmansky
Sorry, broken link in the wiki (fixed now). Use: https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/rh9/mni-1.4_rh9.tar.gz > Hi > > After having major hard drive problems i've lost the minc tools that i had > installed at /usr/pubsw/packages/mni/current/lib so i need to downloa

[Freesurfer] libtiff 3 or 4?

2006-05-02 Thread Darren Weber
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 I'm wondering what the current version of libtiff is at on redhat systems. I only see the following for Debian systems at: http://packages.debian.org/cgi-bin/search_packages.pl?keywords=libtiff&searchon=names&subword=1&version=stable&release=all Y