[Freesurfer] autorecon2

[anthony gallo]

I was running autorecon2 and it did not finish.  The status.log file tells me that it is finished but the data does not appear in the surf folder (some of the lh data is there but no rh).  Here is the end of the log file......does that help?  I tried to run autorecon3 and that was the "new invocation".  I am just not sure why the right hemisphere didn't finish.  Is there a command to tell the program to start after "make Final Surf lh"???  Thanks for your consideration.

Mon May  1 12:06:14 EDT 2006
[EMAIL PROTECTED] EM Registration Mon May  1 12:06:14 EDT 2006
[EMAIL PROTECTED] CA Normalize Mon May  1 12:13:52 EDT 2006
[EMAIL PROTECTED] CA Reg Mon May  1 12:16:45 EDT 2006
[EMAIL PROTECTED] CA Reg Inv Mon May  1 20:26:29 EDT 2006
[EMAIL PROTECTED] Remove Neck Mon May  1 20:29:30 EDT 2006
[EMAIL PROTECTED] SkullLTA Mon May  1 20:33:45 EDT 2006
[EMAIL PROTECTED] SubCort Seg Mon May  1 20:45:47 EDT 2006
[EMAIL PROTECTED] ASeg Stats Mon May  1 21:35:30 EDT 2006
[EMAIL PROTECTED] Intensity Normalization2 Mon May  1 22:00:03 EDT 2006
[EMAIL PROTECTED] Mask BFS Mon May  1 22:10:28 EDT 2006
[EMAIL PROTECTED] WM Segmentation Mon May  1 22:10:41 EDT 2006
[EMAIL PROTECTED] Fill Mon May  1 22:19:24 EDT 2006
[EMAIL PROTECTED] Tessellate lh Mon May  1 22:23:00 EDT 2006
[EMAIL PROTECTED] Smooth1 lh Mon May  1 22:23:11 EDT 2006
[EMAIL PROTECTED] Inflation1 lh Mon May  1 22:23:27 EDT 2006
[EMAIL PROTECTED] QSphere lh Mon May  1 22:27:12 EDT 2006
[EMAIL PROTECTED] Fix Topology lh Mon May  1 22:53:31 EDT 2006
[EMAIL PROTECTED] Make Final Surf lh Tue May  2 04:36:31 EDT 2006
\n\n
New invocation of recon-all
\n\n
status file for recon-all
Tue May  2 10:17:17 EDT 2006
[EMAIL PROTECTED] Sphere lh Tue May  2 10:17:17 EDT 2006
Darwin Pterodactyl.local 8.6.0 Darwin Kernel Version 8.6.0: Tue Mar  7 16:58:48 PST 2006; root:xnu-792.6.70.obj~1/RELEASE_PPC Power Macintosh powerpc

recon-all exited with ERRORS at Tue May  2 10:17:17 EDT 2006

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