Hi
I would be really grateful if someone could help me with the problems I am
having with mk-fieldsign. Even after installing a new version of freesurfer and
making various changes to libraries etc. when i run:
"paint-sess -sf sessid -a rtopy -hemi rh" i get the error below:
tksurfer: run tcl sc
hmmm, do you have it? If not, I've attached a copy.
cheers,
Bruc
e
On Tue, 3 Jan 2006, Jane Aspell wrote:
Hi
I would be really grateful if someone could help me with the problems I am
having with mk-fieldsign. Even after installing a new version of freesurfer and
making various changes to libr
Dear all,
I am running into some problems with tksurfer in the x86_64 dev
release (oct 03). Whenever I attempt to load a group descriptor file
the program quits. Below is the command line output. Any idea what
might be happening?
Thanks,
Sasha
surfer: current subjects dir: /data/final_surfs_3
yes i already had the file. the one you sent me seemed to be a newer version
though, so i ran paint-sess using that, but it gives the same error message.
jane
In message <[EMAIL PROTECTED]> Bruce
Fischl <[EMAIL PROTECTED]> writes:
> hmmm, do you have it? If not, I've attached a copy.
>
> cheers
Are you loading the GDF file from the menu interface, or from a
commandline tool? Does tksurfer run correctly before you load the
file? Does it run correctly for other subjects, and with other GDF
files?
On Tue, Jan 03, 2006 at 09:29:30AM -0500, Sasha Wolosin wrote:
> Dear all,
> I am running i
I am loading the GDF file from the menu interface. Tksurfer runs
correctly before loading the file, including when I load an overlay, but
it quits immediately after loading any GDF file.
>>> Kevin Teich <[EMAIL PROTECTED]> >>>
Are you loading the GDF file from the menu interface, or from a
com
Hi, I'm following up on an earlier email about the mri_ca_normalize step
of autorecon2. I am getting an error while running autorecon2 in the
developmental freesurfer version on tkmeg at the nmr center.
The command I ran was:
margo>
and the output error is below. My directory is
/space/lucy/2
Margo,
In looking at the directory:
/autofs/space/lucy_002/users/margo/subjects/avm004/mri/
it appears the file norm.mgz does not exist, which accounts for the
error running autorecon2.
Normally, the file norm.mgz is created in the autorecon1 stage, so I'm
not sure why it wasn't created, but
Acutally, the autorecon flags require that the subcortical segmentation
be done (ie, you can't use -nosubcortseg with -autorecon)
Nick Schmansky wrote:
Margo,
In looking at the directory:
/autofs/space/lucy_002/users/margo/subjects/avm004/mri/
it appears the file norm.mgz does not exis
Hi,
I am using tkregister2 to register two perfusion volumes. I can adjust the
brightness of the movable volume, but don't know how to adjust brightness
for the target volume. Is this possible?
Thanks,
Vasanth
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try clicking in the image windown and hitting the 'i' key. This will
turn on automatic intensity normalization.
Vasanth Pappu wrote:
Hi,
I am using tkregister2 to register two perfusion volumes. I can adjust
the brightness of the movable volume, but don't know how to adjust
brightness fo
Hi,
Does the 'threshold midpoint' value in tksurfer's curvature display control
correspond to values in the .sulc file (assuming the .sulc file is loaded), or
are they arbitrary values? For example, if I set the value to .50, does this
make all vertices with a .sulc value of .50 or less lighter
the threshold midpoint in the curvature display just sets where the
transition is from red to green (or light gray to dark gray if using
binary colors)
On Wed, 4 Jan 2006, Fornito, Alexander wrote:
Hi,
Does the 'threshold midpoint' value in tksurfer's curvature display control
correspond to
Hi Bruce,
I'm trying to extract thickness for sulci and gyri separately. From what I
understand, positive .sulc values suggest sulci and negative .sulc values
suggest gyri. I'd like to play around with this distinction (e.g., call
everything with a .sulc value < .35 'gyral'), and am wandering if
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