I just tried to run the following command and I got an error which has
appeared before on the freesurfer list after the MINC toolkit was rebuilt.
Can you let me know if this has happened again and what I can do about it?
thanks,
-Keyma
Command: recon-all -stage1 -subjid Y24_031905a_STRUC
Error
Keyma,
Hi, on which machine does this occur? If you start a new shell, and
type:
nu_correct
What does it display?
Nick
On Wed, 2005-08-24 at 11:34 -0400, Keyma Prince wrote:
> I just tried to run the following command and I got an error which has
> appeared before on the freesurfer list af
this is on miracle. I opened a new terminal window and here is the output
from nu_correct
[miracle:STRUCS] (nmr-std-env) nu_correct
Can't locate MNI/Startup.pm in @INC (@INC contains:
/usr/lib/perl5/5.8.5/i386-li nux-thread-multi /usr/lib/perl5/5.8.5
/usr/lib/perl5/site_perl/5.8.5/i386-linux- thre
Kayma,
Can you give it a try now?
Also, can you type the following for me?
cat /etc/redhat-release
uname -a
This will tell me the machine OS and type. Unfortunately, I can't login
to miracle.
Nick
On Wed, 2005-08-24 at 11:40 -0400, Keyma Prince wrote:
> this is on miracle. I opened a ne
I get the same error.
Here is output you asked for:
[miracle:STRUCS] (nmr-std-env) cat /etc/redhat-release
CentOS release 4.1 (Final)
[miracle:STRUCS] (nmr-std-env) uname -a
Linux miracle 2.6.9-11.ELsmp #1 SMP Wed Jun 8 17:54:20 CDT 2005 i686
athlon i386 GNU/Linux
[miracle:STRUCS] (nmr-std-env)
Ok. Sorry about the hassle.
On Wed, 2005-08-24 at 12:34 -0400, Keyma Prince wrote:
> Ok it look good now
>
> thanks
>
> Keyma Prince
> Massachusetts Institute of Technology
> Department of Brain and Cognitive Sciences
> NE20-392
> Cambridge, MA 02139
>
> On Wed, 24 Aug 2005, Nick Schmansky wrot
Hi all,
When I run selxavg-sess, I sometimes get the following error message at
the beginning of the algorithm (right after I get the Residual Error
Estimation):
ERROR: paradigm is ill-conditioned (1.17293e+07)
Check your paradigm file for file for periodicities
My paradigm is fairly simple
It could be caused by several things, but in this case I think the
problem is with the mc-parameters as you suggest. fsfast orthogonalizes
the parameters and then uses the top three, but it may be the case that
the 3rd is badly conditioned, but I've never seen that. You can include
the top 2
Eric,
Hi. The MNI Linear Register option is code that is found in the MINC
toolkit, and it is that code that is generating the message about not
being implemented. So I am afraid you are out of luck in that respect,
in that we do not maintain the MINC toolkit. I think our default
registration t
