Keyma, Hi, on which machine does this occur? If you start a new shell, and type:
nu_correct What does it display? Nick On Wed, 2005-08-24 at 11:34 -0400, Keyma Prince wrote: > I just tried to run the following command and I got an error which has > appeared before on the freesurfer list after the MINC toolkit was rebuilt. > Can you let me know if this has happened again and what I can do about it? > > thanks, > > -Keyma > > > Command: recon-all -stage1 -subjid Y24_031905a_STRUC > > Error output: > > i_ras = (-1, 0, 0) > j_ras = (0, -0, -1) > k_ras = (-0, 1, 0) > Original Data has (1, 1, 1) mm size and (256, 256, 256) voxels. > Data is conformed to 1 mm size and 256 voxels for all directions > writing to .... > Started at: Wed Aug 24 11:21:42 EDT 2005 > Ended at: Wed Aug 24 11:23:46 EDT 2005 > mri_motion_correct2: done > --------------------------------------------- > Nu Intensity Correction Wed Aug 24 11:23:46 EDT 2005 > mri_convert orig nu0.mnc > mri_convert orig nu0.mnc > reading from orig... > TR=2530.00, TE=3.30, TI=1100.00, flip angle=7.00 > i_ras = (-1, 0, 0) > j_ras = (0, -0, -1) > k_ras = (-0, 1, 0) > writing to nu0.mnc... > nu_correct -clobber nu0.mnc nu1.mnc > Can't locate MNI/Startup.pm in @INC (@INC contains: > /usr/lib/perl5/5.8.5/i386-linux-thread-multi /usr/lib/perl5/5.8.5 > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.2/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.1/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi > /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl/5.8.4 > /usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2 > /usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0 > /usr/lib/perl5/site_perl > /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.2/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.1/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi > /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl/5.8.4 > /usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl/5.8.2 > /usr/lib/perl5/vendor_perl/5.8.1 /usr/lib/perl5/vendor_perl/5.8.0 > /usr/lib/perl5/vendor_perl .) at > /usr/pubsw/packages/mni/current/bin/nu_correct line 37. > BEGIN failed--compilation aborted at > /usr/pubsw/packages/mni/current/bin/nu_correct line 37. > ERROR: nu_correct > ------------------------------------------ > Filesystem 1K-blocks Used Available Use% Mounted on > engram:/local_mount/space/engram/11 > 68682136 44104560 24577576 65% > /autofs/space/engram_011 > ------------------------------------------ > recon-all exited with errors at Wed Aug 24 11:24:01 EDT 2005 > > > Keyma Prince > Massachusetts Institute of Technology > Department of Brain and Cognitive Sciences > NE20-392 > Cambridge, MA 02139 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
