RE: [Freesurfer] Anatomical stats for labels

2005-07-13 Thread Bruce Fischl
yes, if you specify pial it will be the pial surface area. On Wed, 13 Jul 2005, Fornito, Alexander wrote: Cool, thanks. On this issue, I've noticed that lables are defined along the wm surface (eg., when you load them in tkmedit, they do not appear long the pial surface). As such, when I ass

[Freesurfer] Overlaying / displaying Gaussian curvature

2005-07-13 Thread Rudolph Pienaar
Hi all - Apologies if this is a simple question, but how can I display the Gaussian curvature on a surface using 'tksurf'? Cheers --R -- Rudolph Pienaar, M.Eng, D.Eng / email: [EMAIL PROTECTED] MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown,

Re: [Freesurfer] Overlaying / displaying Gaussian curvature

2005-07-13 Thread Bruce Fischl
you need to generate it first. You can use mris_curvature -w , which will create .H and .K files for mean and Gaussian curvature respectively. On Wed, 13 Jul 2005, Rudolph Pienaar wrote: Hi all - Apologies if this is a simple question, but how can I display the Gaussian curvature on a surf

RE: [Freesurfer] Anatomical stats for labels

2005-07-13 Thread Fornito, Alexander
Makes sense. If the lable is only defined along the wm surface, how are the pial surface vertices defined/identified? -Original Message- From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Wed 7/13/2005 9:32 PM To: Fornito, Alexander Cc: freesurf

RE: [Freesurfer] Anatomical stats for labels

2005-07-13 Thread Bruce Fischl
the label is identified by the vertex indices, which allow it to be projected onto any surface. On Thu, 14 Jul 2005, Fornito, Alexander wrote: Makes sense. If the lable is only defined along the wm surface, how are the pial surface vertices defined/identified? -Original Message--

RE: [Freesurfer] Anatomical stats for labels

2005-07-13 Thread Fornito, Alexander
Right, so if vertex 'i' is labelled on the white surface, then vertex 'i' will be labelled on the pial surface, and no additional vertices will be labelled on the pial surface (ie., no new ones that are not labelled on the wm surface?). In that case differences is in surface area between the whit

RE: [Freesurfer] Anatomical stats for labels

2005-07-13 Thread Bruce Fischl
not just shear, you could have uniform (i.e. spherical) expansion, but yes. On Thu, 14 Jul 2005, Fornito, Alexander wrote: Right, so if vertex 'i' is labelled on the white surface, then vertex 'i' will be labelled on the pial surface, and no additional vertices will be labelled on the pial s