Re: [Freesurfer] Questions for the estimated brain volume based on new version of FreeSurfer

2023-07-25 Thread Iglesias Gonzalez, Juan E.
, Karthik Subject: Re: [Freesurfer] Questions for the estimated brain volume based on new version of FreeSurfer External Email - Use Caution First of all, you are not going to get the same answer from these different programs. For ento, recon-all will zero the thickness in some areas around

Re: [Freesurfer] Questions for the estimated brain volume based on new version of FreeSurfer

2023-07-20 Thread Douglas N. Greve
External Email - Use Caution First of all, you are not going to get the same answer from these different programs. For ento, recon-all will zero the thickness in some areas around ento, and clinical is probably not doing that. Still a factor of 4 seems pretty large. Maybe Karthik

[Freesurfer] Questions for the estimated brain volume based on new version of FreeSurfer

2023-07-06 Thread Yoonho Hwang
External Email - Use Caution Dear FS developers, Hi, I am very happy that we can use new features of FreeSurfer (e.g., recon-all-clinical.sh, SynthSeg, SynthSR, etc.) While using a variety of functions from FreeSurfer (v7.3.2 and v7.4.1), we would like to hear the answers to the

Re: [Freesurfer] do I have to reprocess my subjects if I install new version of Freesurfer?

2010-08-26 Thread Bruce Fischl
yes, you should reprocess them all, but it shouldn't require any manual interventions as we preserve the manual edits. cheers Bruce On Thu, 26 Aug 2010, Kevin Head wrote: > Do I have to reprocess my data if I install the new (v5.0.0) version of > Freesurfer? If I don't, and process more subjec

[Freesurfer] do I have to reprocess my subjects if I install new version of Freesurfer?

2010-08-26 Thread Kevin Head
Do I have to reprocess my data if I install the new (v5.0.0) version of Freesurfer? If I don't, and process more subjects in the study with v5.0.0 will that be problematic? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.

Re: [Freesurfer] errors in library in new version of Freesurfer

2006-06-06 Thread Joongnam Yang
fer. Nam. >>> Nick Schmansky <[EMAIL PROTECTED]> 06/06/06 4:42 PM >>> What is the output when this is typed: source $FREESURFER_HOME/SetUpFreeSurfer.csh and this: ldd `which mri_convert` and what OS is this installed on? On Tue, 2006-06-06 at 15:24 -0400, Joongnam Yang

Re: [Freesurfer] errors in library in new version of Freesurfer

2006-06-06 Thread Nick Schmansky
What is the output when this is typed: source $FREESURFER_HOME/SetUpFreeSurfer.csh and this: ldd `which mri_convert` and what OS is this installed on? On Tue, 2006-06-06 at 15:24 -0400, Joongnam Yang wrote: > I installed the new version of Freesurfer by downloading from Freesurfer >

[Freesurfer] errors in library in new version of Freesurfer

2006-06-06 Thread Joongnam Yang
I installed the new version of Freesurfer by downloading from Freesurfer Wiki website. Then, I ran recon-all -subjid subjectname -autorecon1, and got the following library errors. Would someone suggest a solution? Nam. mri_convert: error while loading shared libraries: libgsl.so.0: cannot open

Re: new version of freesurfer

2003-06-04 Thread Kevin Teich
> is the new version out yet? or is it still on hold Still on hold. -- Kevin Teich

new version of freesurfer

2003-06-04 Thread Andy Myers
sorry, is the new version out yet? or is it still on hold thanks andy