Hi Dahlia,
this is because there are voxels labeled cortex through which the lh.orig
surface passes. If you changed those to accumbens then the surface
wouldn't deform inwards there. I guess this is another case that should be
handled by the stuff that detects non-cortical regions and freezes
I'd appreciate that. For example: data is at
~dahlia/structurals/subj30/mri/wm.mgz and the coords are [133 126 155].
[in this case the corrections were made automatically, not manual edits -
but the white surface doesn't follow the volume edits)
Thanks!
> then you didn't fix it properly. Did you f
then you didn't fix it properly. Did you find the source of the defect?
This is kind of an acquired skill as you have to page through a number of
slices almost by definition, and sometimes need to look in different
orientations. If you point us at the data (and the voxel coords of the
problem)
Thanks Bruce. But what happens when I've already done the manual edit, run
autorecon2-wm and still see the defect?
> Hi Dahlia,
> this usually means there was a topological defect that was fixed
> incorrectly. You'll need to edit the wm.mgz to remove it, then run
> autorecon2-wm.
>
> cheers,
> Bru
Hi Dahlia,
this usually means there was a topological defect that was fixed
incorrectly. You'll need to edit the wm.mgz to remove it, then run
autorecon2-wm.
cheers,
Bruce
On Mon, 22 Sep
2008 [EMAIL PROTECTED] wrote:
Hi,
What should I do when the white volume looks right (e.g. filled in w
