Great, good to know. My LANG is en_US.UTF-8, everything else is not set.
On Thu, 7 Jul 2011, Franz Liem wrote:
> Dear Anastasia & all.
>
> I fixed it.
>
> The problem was my LOCALE setting which leads to different handling of
> decimal separators by awk (for further details see
> http://object
Dear Anastasia & all.
I fixed it.
The problem was my LOCALE setting which leads to different handling of decimal
separators by awk (for further details see
http://objectmix.com/awk/716715-awk-different-decimal-separator-different-linux-distros.html).
My original setting was:
% locale
LANG="de_
Hi again,
I found out that, if I change the flip4fsl line
printf '%s ' `cat $inbvecs | awk -v sgn=$sign[$k]1 -v n=$k
'{print sgn*$n}'` \
to
printf '%s ' `cat $inbvecs | awk -v sgn=$sign[$k]1 -v n=$k
'{print $n}'` \
(deleting the sgn*) the values in the out-bvecs a
I'm attaching what I get when I run it. Only the trailing zeros are
missing.
On Wed, 6 Jul 2011, Franz Liem wrote:
If i flip4fsl my fake file the the numbers after the decimal point are missing
in the output (bvecs_bvecs_onezero3decpoint1_western_out).
I have attached a fake bvecs fitting
If i flip4fsl my fake file the the numbers after the decimal point are missing
in the output (bvecs_bvecs_onezero3decpoint1_western_out).
I have attached a fake bvecs fitting your tutorial data (70 lines). Would you
be so kind, as to run this.
Thank you so much for your help,
Franz
bvecs_bv
I'd need the nifti file to run flip4fsl. Can you try it on your data?
On Wed, 6 Jul 2011, Franz Liem wrote:
> does your flip4fsl convert this file correctly (with the numbers after the
> decimal point)?
>
> Thank you,
> Franz
>
> Am 06.07.2011 um 18:06 schrieb Anastasia Yendiki:
>
>>
>> Yes!
>>
does your flip4fsl convert this file correctly (with the numbers after the
decimal point)?
Thank you,
Franz
Am 06.07.2011 um 18:06 schrieb Anastasia Yendiki:
>
> Yes!
>
> On Wed, 6 Jul 2011, Franz Liem wrote:
>
>> Hi Anastasia,
>> thank you. I created this file from scratch with osx' TextEdi
Yes!
On Wed, 6 Jul 2011, Franz Liem wrote:
> Hi Anastasia,
> thank you. I created this file from scratch with osx' TextEdit and saved it
> as western european (Mac OS Roman).
> Are you able to read this?
>
> Thanks,
> Franz
>
___
Freesurfer mailing li
Hi Anastasia,
thank you. I created this file from scratch with osx' TextEdit and saved it as
western european (Mac OS Roman).
Are you able to read this?
Thanks,
Franz
bvecs_onezero3decpoint1_western
Description: Binary data
Am 06.07.2011 um 17:42 schrieb Anastasia Yendiki:
>
> Hi Franz - Look
Hi Franz - Looks like it may be a windows vs. unix text file issue.
Looking at dwi_orig.mghdti.bvecs under unix, it seems that it has
windows-specific carriage returns (they look like "^M" in unix). Actually,
I could only see this on a darwin machine, on a centos machine I can only
read the fi
Hi Franz - As long as you have a good aparc+aseg, the exact version of the
recon should not matter.
a.y
On Wed, 6 Jul 2011, Franz Liem wrote:
> and another question.
> Is it OK to run tracula with recons done with an earlier version (5.0.0)?
>
> Thank you,
> Franz
>
> Am 06.07.2011 um 00:05 sc
and another question.
Is it OK to run tracula with recons done with an earlier version (5.0.0)?
Thank you,
Franz
Am 06.07.2011 um 00:05 schrieb Anastasia Yendiki:
>
> Hi Franz - Which of the files that you sent us are the original files (the
> bvalfile and bvecfile from your dmrirc)? I could n
Hi Priti and Anastasia.
Thank you very much for your replies.
Prit, I ran you modified_bvecs. This resulted in zeros (see bvecs_out). I also
tried the modified_bvecs in a tab-deliniated version. same result.
Anastasia, the original bvecs file is attached as bvecs_orig. I imported this
into exc
Hi Franz - Which of the files that you sent us are the original files (the
bvalfile and bvecfile from your dmrirc)? I could not find any files that
had 33 lines among your attachments so I'm not sure what your input files
look like.
Thanks,
a.y
On Tue, 5 Jul 2011, Franz Liem wrote:
> Hello a
Hi Franz,
Sorry I just saw your previous email now. The problem could be due to the
variable decimal places you've used in your input bvecs file. I've
modified your bvecs file from the previous email to 3 decimal places
constantly for all the gradient values (See Attached!!). Can you check to
see
Hi Franz,
Please refer to the following page:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Tracula
Specifically Step7.2 for the format in which bvals/bvecs files should be
given as an input.
If your input bvals/bvecs are in the right format flip4fsl should not give
you an error.
Also if
Hello again.
I dug into the code and could locate the problem (I don't have a solution,
though. My coding skills are quite amateurish.) I think the problem somehow
lies in the format of my bvecs file.
flip4fsl is not able to read it correctly:
---
if (-e $inbvecs) then
echo "INFO: found
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