Dear Anastasia & all. I fixed it.
The problem was my LOCALE setting which leads to different handling of decimal separators by awk (for further details see http://objectmix.com/awk/716715-awk-different-decimal-separator-different-linux-distros.html). My original setting was: % locale LANG="de_CH.UTF-8" LC_COLLATE="de_CH.UTF-8" LC_CTYPE="de_CH.UTF-8" LC_MESSAGES="de_CH.UTF-8" LC_MONETARY="de_CH.UTF-8" LC_NUMERIC="de_CH.UTF-8" LC_TIME="de_CH.UTF-8" LC_ALL= Therefore awk used the comma as decimal separator. In order to change this I added the following line to the .tcshrc file: setenv LC_ALL en_US resulting in: % locale LANG="de_CH.UTF-8" LC_COLLATE="en_US" LC_CTYPE="en_US" LC_MESSAGES="en_US" LC_MONETARY="en_US" LC_NUMERIC="en_US" LC_TIME="en_US" LC_ALL="en_US" Now the bvec rotation and correction works fine. Is your setting en_US or another format (e.g. en_US.ISO8859-1, en_US.ISO8859-15, en_US.US-ASCII, en_US.UTF-8)? Anastasia and Priti, thank you for your time. Best, Franz Am 06.07.2011 um 21:32 schrieb Anastasia Yendiki: > > I'm attaching what I get when I run it. Only the trailing zeros are missing. > > On Wed, 6 Jul 2011, Franz Liem wrote: > >> If i flip4fsl my fake file the the numbers after the decimal point are >> missing in the output (bvecs_bvecs_onezero3decpoint1_western_out). >> >> I have attached a fake bvecs fitting your tutorial data (70 lines). Would >> you be so kind, as to run this. >> >> Thank you so much for your help, >> Franz >> >> > <new1.mghdti.bvecs>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
