you can use mri_surf2surf, using the XYZ (--sval-xyz) as input, applying
a transformation --reg, and spec XYZ as an output (--tval-xyz). You will
need a registration matrix to map it from the surf coordinates to
whatever coordinates slicer uses.
doug
On 02/19/2013 06:05 AM, Efrat Kliper wrote:
Hi Efrat
Does it look ok in tkmedit or freeview?
Cheers
Bruce
On Feb 19, 2013, at 6:05 AM, Efrat Kliper wrote:
> Dear freesurfer expert,
>
> We have preformed the full autorecon command using freesurfer and want to
> view the results in Slicer,
> When we load the pial surface onto slicer it
Hi Joost, try using mri_surf2surf, something like
mri_surf2surf --sval-xyz lh.pial --reg register.dat --tval
lh.pial.native --tval-xyz --hemi lh --subject subject
The register.dat you can get from
tkregister2 --mov orig.mgz --targ rawavg.mgz --regheader --no-edit --reg
register.dat
doug
On
