Re: [Freesurfer] recon-all problems [solved]

2013-04-15 Thread Nick Schmansky
Marcos, Can you give this version of tkmedit a try on your Fedora 18 system? ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ you will need to copy tkmedit.bin to your freesurfer/tktools directory (not the freesurfer/bin directory). you may need to type this to ma

Re: [Freesurfer] recon-all problems [solved]

2013-04-15 Thread Nick Schmansky
Marcos, Thanks for looking into this. We dont have a Fedora 18 system to replicate the problem on, but we're looking at the section of code described in bugzilla report. We may need your help to test any fixes we devise. Nick On Mon, 2013-04-15 at 17:59 -0300, Marcos Martins da Silva wrote: >

Re: [Freesurfer] recon-all problems

2011-12-19 Thread Allison Player
-i needs to point to the first dicom (or whichever format your scanner data is in) in the series. Allison On Mon, 19 Dec 2011, LAOUCHEDI MAKHLOUF wrote: hi eveyone   i ru the command recon-all of the 5.1 version of freesurfer on some subjects using the following arguments : rec