Re: [Freesurfer] obtain a V1 mask.nii.gz

2013-05-13 Thread lujiao luo
Thanks so much for your suggestion, Bruce. I will have a try. Yours Lulu 2013/5/13 Bruce Fischl > try mri_label2vol > > > cheers > Bruce > On Mon, 13 May 2013, lujiao luo wrote: > > Hello Bruce, >> Thanks so much for your reply. >> >> Yes, you are right, I've obtained the lh.V1.label. But I

Re: [Freesurfer] obtain a V1 mask.nii.gz

2013-05-13 Thread Bruce Fischl
try mri_label2vol cheers Bruce On Mon, 13 May 2013, lujiao luo wrote: Hello Bruce, Thanks so much for your reply. Yes, you are right,  I've obtained the  lh.V1.label. But I couldn't figure out how to create a roi.nii.gz mask by using the lhV1.lable file or lhBA.annot, and then I can use it as

Re: [Freesurfer] obtain a V1 mask.nii.gz

2013-05-13 Thread lujiao luo
Hello Bruce, Thanks so much for your reply. Yes, you are right, I've obtained the lh.V1.label. But I couldn't figure out how to create a roi.nii.gz mask by using the lhV1.lable file or lhBA.annot, and then I can use it as a seed for my fiber tracking. Yours Lulu. 2013/5/13 Bruce Fischl >

Re: [Freesurfer] obtain a V1 mask.nii.gz

2013-05-13 Thread Bruce Fischl
Hi Lulu what version are you running? If it's a newer one you should have label files in the label subdir named [lr]h.V1.label and [lr]h.V1.thresh.label (a thresholded version of the first one). cheers Bruce On Mon, 13 May 2013, lujiao luo wrote: Hello, experts, I am trying to obtain a