After I try the code:
mri_compute_layer_fractions -nlayers 4
$SUBJECTS_DIR/fMRI/register.lta
$SUBJECTS_DIR/fMRI/HIP001_rest_preproc_norm.nii test.mgz
open test.mgz using freeview like this! Not binarize according different
layers! Also the frontal part of the brain is missing!
> On Sep 1
you can use -n to change the name of the surfaces, and -nlayers
to specify the number of layers it computes (# of surfaces = 1+number
of layers I think)
On Tue, 1 Sep 2015, Yun Wang wrote:
Thanks! But it looks this script keeps looking for the lh.gwdist00N forever,
here is the error message:
Thanks! But it looks this script keeps looking for the lh.gwdist00N forever,
here is the error message:
mri_compute_layer_fractions: could not load lh surface 5 from
/Users/emilyUS/Documents/Cortical_layer/Data/anatomical/Rest-Anatomical/output/surf/lh.gwdist005
I do not have lh.gwdist005. How
no, you just need to name them in the way that
mri_compute_layer_fractions is expecting (e.g. lh.gwdist000 for white,
etc...)
On Tue, 1 Sep 2015, Yun Wang wrote:
> I do have 5 intermediate surfaces, should I combine them together?
>
>> On Sep 1, 2015, at 10:43, Bruce Fischl wrote:
>>
>> you nee
I use the mris_expand like this:
mris_expand -thickness lh.white 0.2lh.white_outer0.2GM
mris_expand -thickness lh.white 0.4 lh.white_outer_0.4GM
mris_expand -thickness lh.white 0.6lh.white_outer0.6GM
mris_expand -thickness lh.white 0.8 lh.white_outer_0.8GM
anything wrong?
> On S
I do have 5 intermediate surfaces, should I combine them together?
> On Sep 1, 2015, at 10:43, Bruce Fischl wrote:
>
> you need to use mris_expand to generate the family of intermediate surfaces
>
>
> cheers
> Bruce
> On Tue, 1 Sep 2015, Yun Wang wrote:
>
>> Hi all experts,
>> I have the erro
you need to use mris_expand to generate the family of intermediate
surfaces
cheers
Bruce
On Tue, 1 Sep 2015, Yun Wang wrote:
Hi all experts,
I have the error message when trying to use mri_compute_layer_fractions.
mri_compute_layer_fractions $SUBJECTS_DIR/fMRI/register.lta
$SUBJECTS_DIR/wh
