no, you just need to name them in the way that mri_compute_layer_fractions is expecting (e.g. lh.gwdist000 for white, etc...) On Tue, 1 Sep 2015, Yun Wang wrote:
> I do have 5 intermediate surfaces, should I combine them together? > >> On Sep 1, 2015, at 10:43, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: >> >> you need to use mris_expand to generate the family of intermediate surfaces >> >> >> cheers >> Bruce >> On Tue, 1 Sep 2015, Yun Wang wrote: >> >>> Hi all experts, >>> I have the error message when trying to use mri_compute_layer_fractions. >>> mri_compute_layer_fractions $SUBJECTS_DIR/fMRI/register.lta >>> $SUBJECTS_DIR/white_lh.mgz test >>> reading registration >>> file/Users/emilyUS/Documents/Cortical_layer/Data/anatomical/Rest-Anatomical/fMR >>> I/register.lta >>> regio_read_register: loading lta >>> regio_read_register: loading lta >>> reading >>> volume/Users/emilyUS/Documents/Cortical_layer/Data/anatomical/Rest-Anatomical/out >>> put/mri/aseg.mgz >>> reading laminar surfaces from gwdist.? >>> reading >>> surface/Users/emilyUS/Documents/Cortical_layer/Data/anatomical/Rest-Anatomical/out >>> put/surf/lh.gwdist000 >>> Anyone know the gwdist? how I can get it? >>> Thanks! >>> Yun Wang >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
