Re: [Freesurfer] merging dti data

2013-04-23 Thread Douglas N Greve
ik with the AFNI command >> 3dZcat. I made a nifti file from the merged afni brik. i will try running >> tracula on the merged nifti file. >> >> Jon >> >> ----- Original Message - >> From: "Douglas Greve" >> To: "Jon Wieser" &

Re: [Freesurfer] merging dti data

2013-04-23 Thread Jon Wieser
Hi Doug we got good results with the dit of the merged brik's Jon - Original Message - From: "Douglas N Greve" To: "Jon Wieser" Cc: "freesurfer" Sent: Thursday, April 11, 2013 11:22:13 AM Subject: Re: [Freesurfer] merging dti data That might work. I

Re: [Freesurfer] merging dti data

2013-04-11 Thread Jon Wieser
Hi Doug I can motion correct the briks with 3dvolreg Jon - Original Message - From: "Douglas N Greve" To: "Jon Wieser" Cc: "freesurfer" Sent: Thursday, April 11, 2013 11:22:13 AM Subject: Re: [Freesurfer] merging dti data That might work. I think "mot

Re: [Freesurfer] merging dti data

2013-04-11 Thread Douglas N Greve
acula on the merged nifti file. > > Jon > > - Original Message - > From: "Douglas Greve" > To: "Jon Wieser" > Cc: "freesurfer" > Sent: Thursday, April 11, 2013 9:56:53 AM > Subject: Re: [Freesurfer] merging dti data > > yes, they work for whol

Re: [Freesurfer] merging dti data

2013-04-11 Thread Jon Wieser
nifti file from the merged afni brik. i will try running tracula on the merged nifti file. Jon - Original Message - From: "Douglas Greve" To: "Jon Wieser" Cc: "freesurfer" Sent: Thursday, April 11, 2013 9:56:53 AM Subject: Re: [Freesurfer] merging dti d

Re: [Freesurfer] merging dti data

2013-04-11 Thread Douglas Greve
ine for merging two > whole brain datasets. > jon > > - Original Message - > From: "Douglas Greve" > To: freesurfer@nmr.mgh.harvard.edu > Sent: Wednesday, April 10, 2013 10:13:05 PM > Subject: Re: [Freesurfer] merging dti data > > > Hi Jon, I don&#

Re: [Freesurfer] merging dti data

2013-04-11 Thread Jon Wieser
Those commands were given to me by Anastasia. they work fine for merging two whole brain datasets. jon - Original Message - From: "Douglas Greve" To: freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, April 10, 2013 10:13:05 PM Subject: Re: [Freesurfer] merging dti data Hi Jo

Re: [Freesurfer] merging dti data

2013-04-10 Thread Douglas Greve
Hi Jon, I don't know how to make this work, but I'm sure that those commands will not do it. Sorry:( doug On 4/10/13 1:13 PM, Jon Wieser wrote: > we captured some dti data. there were 2 runs. we acquired in the axial plane, > 2mm slice thickness the first run captured the lower half of the b