Re: [Freesurfer] longitudinal recon-all -long error

2014-04-28 Thread Martin Reuter
Hi Corinna, the 001.mgz is the first file created in the cross sectional stream (when you import your dicom) it is the input image to the stream and just the dicom converted into mgz format. If it is corrupted, you should rerun this cross sectional time point (just to be safe), the base and t

Re: [Freesurfer] longitudinal recon-all -long error

2014-04-28 Thread Corinna Bauer
Hi Martin, Neither freeview nor tkmedit could open the 001.mgz file. It could not read 262144 bytes at slice 4. At this point is my best option to re-run this time point from the beginning? Corinna On Mon, Apr 28, 2014 at 9:18 AM, Martin Reuter wrote: > Hi Corinna, > > try to open > > /home/D

Re: [Freesurfer] longitudinal recon-all -long error

2014-04-28 Thread Martin Reuter
Hi Corinna, try to open /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz in freeview to see if maybe the file is corrupted. Best, Martin On 04/25/2014 03:46 PM, Corinna Bauer wrote: Hello, I am on the recon-all -long step of the longitudinal processing stream