Hi Martin, Neither freeview nor tkmedit could open the 001.mgz file. It could not read 262144 bytes at slice 4. At this point is my best option to re-run this time point from the beginning?
Corinna On Mon, Apr 28, 2014 at 9:18 AM, Martin Reuter <mreu...@nmr.mgh.harvard.edu>wrote: > Hi Corinna, > > try to open > > /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz > > in freeview to see if maybe the file is corrupted. > > Best, Martin > > > > On 04/25/2014 03:46 PM, Corinna Bauer wrote: > > Hello, > I am on the recon-all -long step of the longitudinal processing stream and > the final time point exits with errors at the mri_convert stage. > > mri_convert -at > /home/Documents/longitudinal_morph/meta/test_subject_template/mri/transforms/test_subject_2ndpostop_to_test_subject_template.lta > -odt uchar -rt cubic > /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz > /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop.long.test_subject_template/mri/orig.mgz > > > mghRead(/home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz): > could not read 262144 bytes at slice 4 > > I still have plenty of space left on the drive > > > total used free shared buffers cached > Mem: 16348132 14856524 1491608 0 534916 6193928 > -/+ buffers/cache: 8127680 8220452 > Swap: 16690172 573232 16116940 > > > > Any suggestions? The two previous timepoints finished without error. > > > Corinna > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Martin Reuter, Ph.D. > > Instructor in Neurology > Harvard Medical School > Assistant in Neuroscience > Dept. of Radiology, Massachusetts General Hospital > Dept. of Neurology, Massachusetts General Hospital > Research Affiliate > Computer Science and Artificial Intelligence Lab, > Dept. of Electrical Engineering and Computer Science, > Massachusetts Institute of Technology > > A.A.Martinos Center for Biomedical Imaging > 149 Thirteenth Street, Suite 2301 > Charlestown, MA 02129 > > Phone: +1-617-724-5652 > Email: > mreu...@nmr.mgh.harvard.edu > reu...@mit.edu > Web : http://reuter.mit.edu > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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