Hi Anna,
that was not my suggestion, I suggested to pass both the cross sectional time
point ID and the base id (together with the long flag) and additionally the
-localGI flag.
So if you time point 1 is XXX_1 and time point 2 is XXX_2 and your base is
XXX_base then
recon-all -long XXX_1 XXX_
hi Martin, I just tried this and it resulted in errors/ Do I not have to
specify a flag for the baseid or for each subject, eg -s?
What I did (according to your suggestion)
recon-all -long XXX_1.long XXX_2.long -localGI
This did not work? Do you know why potentially?
On Wed, Mar 26, 2014 at 3:
Hi Anna,
no, you would still do:
recon-all -long tpid baseid -localGI
just not use the '-all'.
Best, Martin
On 03/26/2014 11:12 AM, Anna Jonsson wrote:
thank you. But if the lnog process has already been done and these
induviduals already have long directories so to speak, I would just
pu
thank you. But if the lnog process has already been done and these
induviduals already have long directories so to speak, I would just put the
lgi flag on as normal but just replace the subject name with the long
subject name eg ?
recon-all -s _long -localGI
Thank you
On Sat, Mar 15, 2014
Hi Anna,
for the image processing, you just add the lgi flag to the regular longitudinal
recon-all command
recon-all -long …… -lgi
for the analysis after that you use the long directories.
Best, Martin
On Mar 15, 2014, at 10:04 AM, Anna Jonsson wrote:
> Dear group,
>
> If I want conduct
