Hi Anna,

no, you would still do:
recon-all -long tpid baseid -localGI

just not use the '-all'.

Best, Martin



On 03/26/2014 11:12 AM, Anna Jonsson wrote:
thank you. But if the lnog process has already been done and these induviduals already have long directories so to speak, I would just put the lgi flag on as normal but just replace the subject name with the long subject name eg ?
recon-all -s XXXX_long -localGI

Thank you


On Sat, Mar 15, 2014 at 2:07 PM, Martin Reuter <mreu...@nmr.mgh.harvard.edu <mailto:mreu...@nmr.mgh.harvard.edu>> wrote:
    Hi Anna,

    for the image processing, you just add the lgi flag to the regular
    longitudinal recon-all command
    recon-all -long ......     -lgi

    for the analysis after that you use the long directories.

    Best, Martin

    On Mar 15, 2014, at 10:04 AM, Anna Jonsson <ajonsso...@gmail.com
    <mailto:ajonsso...@gmail.com>> wrote:

    Dear group,

    If I want conduct gyrification analyses on the long runs that
    have been through the longitudinal stream, do I just perform the
    "normal" baseline command on the .long data?

    thank you,

    kind wishes

    Anna
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