Re: [Freesurfer] label file from freesurfer 5.3

Thank you so much for your help! -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Disorders Institute The George Washington University and Children’s National Health System E-mail: daniely...@gwu.edu > On May 31, 2017, at 3:24 PM, B

Re: [Freesurfer] label file from freesurfer 5.3

sure. Easy enough to do in matlab. On Wed, 31 May 2017, Daniel Yang wrote: Thanks, Bruce! It works now. Is it possible I can convert all the negative values in the label to something like 1? Best, Daniel --  Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Diso

Re: [Freesurfer] label file from freesurfer 5.3

Thanks, Bruce! It works now. Is it possible I can convert all the negative values in the label to something like 1? Best, Daniel -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Disorders Institute The George Washington University and Children’s National Hea

Re: [Freesurfer] label file from freesurfer 5.3

Hi Daniel it's because the values in your label are all negative and the default threshold is 0. Set it to -20 or something and you will see the label cheers Bruce On Wed, 31 May 2017, Daniel Yang wrote: Thank you. I just sent it to your mailbox. --  Y.J. Daniel Yang, Ph.D. Assistant Resea

Re: [Freesurfer] label file from freesurfer 5.3

Thank you. I just sent it to your mailbox. -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Disorders Institute The George Washington University and Children’s National Health System E-mail: daniely...@gwu.edu > On May 31, 2017, at

Re: [Freesurfer] label file from freesurfer 5.3

sure, but I'll need the subject as well (at least one surface) On Wed, 31 May 2017, Daniel Yang wrote: Good to know, then, it must be the way I interact with FS 6.0.0 that is wrong. It’s a surface label. Can I send you the label file to see if you could view that in FS 6.0.0’s freeview using

Re: [Freesurfer] label file from freesurfer 5.3

Good to know, then, it must be the way I interact with FS 6.0.0 that is wrong. It’s a surface label. Can I send you the label file to see if you could view that in FS 6.0.0’s freeview using command line? -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Dis

Re: [Freesurfer] label file from freesurfer 5.3

no, the label format should be backwards compatible. Was it a surface or volume label? On Wed, 31 May 2017, Daniel Yang wrote: Dear FreeSurfer experts, When I tried to use FreeSurfer 6.0.0’s freeview to open a label file generated by FreeSurfer 5.3, I could not see anything. Is it incompatib