gain,
Lara
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Fischl, Bruce
Sent: Wednesday, June 23, 2021 4:53 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] how to shrink WM surface in one region
Hi Lara
Can you send us some pictures? The answer depends on why
Hi Lara
Can you send us some pictures? The answer depends on why the white matter
surface is settling at the wrong place
Bruce
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Lara Foland-Ross
Sent: Wednesday, June 23, 2021 7:11 PM
To: freesurfer@nmr.mgh.har
Hi Mike
sorry, I never really documented it. Essentially they provide limits on
the allowable intensities of the various tissue classes at the different
boundaries (gray/white and pial). Unless those constraints are satisfied it
will not try to place the boundary in that region
cheers
Bruce
Have a look at mris_make_surfaces.c, this is how I learned about most of
this stuff as the code is pretty well commented (and Bruce telling me
things).
Peace,
Matt.
On 9/12/14, 11:01 PM, "Harms, Michael" wrote:
>
>Hi Bruce,
>I was wondering if there is info somewhere about what each of those 7
Hi Bruce,
I was wondering if there is info somewhere about what each of those 7 MIN_
and MAX_ variables control regarding the positioning of the white and pial
surfaces?
thanks,
-MH
--
Michael Harms, Ph.D.
---
Conte Center for the Neurosci
Hi Andrea
what is the background image? This is usually either a failure of the
intensity normalization or of the surface deformation/segmentation to
adaptively estimate the underlying intensity distributions of the
gray/white matter. If you look in recon-all.log for that subject you will
fin
mris_expand may do what you want.
You can use it to shrink or expand the points on a surface by a fixed
percentage or a fixed distance.
Regards,
Don
Don Krieger, Ph.D.
Department of Neurological Surgery
University of Pittsburgh
(412)648-9654 Office
(412)521-4431 Cell/Text
From: freesurfer-boun
