Hi Lara
Can you send us some pictures? The answer depends on why the white matter
surface is settling at the wrong place
Bruce
-----Original Message-----
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Lara Foland-Ross
Sent: Wednesday, June 23, 2021 7:11 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] how to shrink WM surface in one region
External Email - Use Caution
Hi everyone,
Very quick question - I need to shrink the white matter surface in a very
specific (constrained) region. Can you please confirm that the right way to go
about this is to (1) manually remove voxels from the WM volume in freeview,
then (2) save edits on that WM volume, and then (3) run recon-all?
Specifically, re: #3 - many brains also need control points, so I'm running "
recon-all -autorecon2-cp -autorecon3"
Using this command structure, I'm not seeing that any of the edits I'm making
to the WM volume are influencing the white matter surface line... Only the
control points.
Thank you in advance,
Lara
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