You can try running mri_coreg, eg,
mri_coreg --mov your-non-image.nii.gz --s subject --reg reg.lta
The apply it
mri_vol2vol --mov your-non-image.nii.gz --lta reg.lta --o
you-non-image-in-fs-space.nii.gz
On 3/4/2025 5:59 PM, Chavez, Caitlyn wrote:
External Email - Use Caution
Hello F
External Email - Use Caution
The freesurfer license.
https://surfer.nmr.mgh.harvard.edu/registration.html
On Wed, Feb 13, 2019 at 1:38 PM Hoopes, Andrew
wrote:
> Hi, what are you trying to register for? A wiki account?
>
> Andrew
>
>
>
>
>
> *From: * on behalf of Peng Wang <
>
Hi, what are you trying to register for? A wiki account?
Andrew
From: on behalf of Peng Wang
Reply-To: FS Help
Date: Wednesday, February 13, 2019 at 12:54 PM
To: FS Help
Subject: [Freesurfer] FreeSurfer Registration Error
External Email - Use Caution
Whatever I filled the form I go
I don't think robust register will work as that assumes that the
modalites are the same. You can try using mri_coreg, which you can find
here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg
On 09/08/2016 03:51 PM, Frank Robert wrote:
> Hello FreeSurfer expert
>
> I wa
Hi Rebecca, this is intentional. The whole brain is divided up into left
cortical hemi, right hemi, and subcortical structures. the MNI305 is
only supposed to handle the subcortical structures. If you want a brain
volume with cortical and subcortical, you can use vlrmerge to merge the
volume,
Hi Rebecca, have you verified that the registration to anatomical space
is correct?
doug
On 07/02/2013 08:09 AM, Lijia Wang wrote:
> Hi experts,
>
> When I'm pre-processing the 4D whole brain BOLD images using
> "preproc-sess -sf -mni305 -fwhm 5 -fsd bold -per-run" , the results of
> registrat
opher; freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] freesurfer registration
Hi Chris,
we actually do use my robust registration tool for it since a while
(FS 5.0, Aug 2010), replacing FLIRT which was used before. Here is the
citation:
M. Reuter, H.D. Rosas, B. Fischl. *Highly Accurate In
Hi Chris,
we actually do use my robust registration tool for it since a while (FS
5.0, Aug 2010), replacing FLIRT which was used before. Here is the citation:
M. Reuter, H.D. Rosas, B. Fischl. *Highly Accurate Inverse Consistent
Registration: A Robust Approach*. /NeuroImage 53(4):1181-1196, 2
yes, it's rigid and used to be sum of squares but in the newer versions we
will be using Martin's robust registration (which is a tukey biweight
instead of SSE)
On Tue, 25 Jun 2013, Parker, Christopher wrote:
> Hi,
> I understand that the recon-all script registers and then averages two
> anato
