Re: [Freesurfer] aparc.a2009s+aseg problem

2011-12-30 Thread Michael Harms
; file. > > thanks for all > > --- En date de : Ven 30.12.11, Michael Harms > a écrit : > > De: Michael Harms > Objet: Re: [Freesurfer] aparc.a2009s+aseg problem > À: "LAOUCHEDI MAKHLOUF" > Cc: freesurfer@nmr.mgh.h

Re: [Freesurfer] aparc.a2009s+aseg problem

2011-12-30 Thread Michael Harms
ical Parc 2" . what do you think is the problem ? i > attached the log > > thanks > > > > --- En date de : Jeu 29.12.11, Michael Harms > a écrit : > > De: Michael Harms > Objet: Re: [Freesurfer] aparc.a2009s+aseg problem &g

Re: [Freesurfer] aparc.a2009s+aseg problem

2011-12-29 Thread Michael Harms
Michael > i looked in the job.log file (i am using a condor > cluster) that i attached, and there is no such section! > > thanks > > --- En date de : Jeu 29.12.11, Michael Harms > a écrit : > > De: Michael Harms > Objet: Re:

Re: [Freesurfer] aparc.a2009s+aseg problem

2011-12-29 Thread Michael Harms
The problem is apparently that the Xh.aparc.a2009s.annot wasn't created. Look in scripts/recon-all.log and make sure that the section "Cortical Parc 2" is present, and if it is, look for clues as to why the .annot wasn't created. cheers, -MH On Thu, 2011-12-29 at 16:03 +, LAOUCHEDI MAKHLOUF