That is a job log from your cluster, which isn't helpful to the issue at hand.
You need to look in <subjdir>/scripts/recon-all.log, which contains a complete log of the entire recon-all processing stream. cheers, -MH On Thu, 2011-12-29 at 17:10 +0000, LAOUCHEDI MAKHLOUF wrote: > Hi Michael > i looked in the job.log file (i am using a condor > cluster) that i attached, and there is no such section! > > thanks > > --- En date de : Jeu 29.12.11, Michael Harms <mha...@conte.wustl.edu> > a écrit : > > De: Michael Harms <mha...@conte.wustl.edu> > Objet: Re: [Freesurfer] aparc.a2009s+aseg problem > À: "LAOUCHEDI MAKHLOUF" <laouma...@yahoo.fr> > Cc: freesurfer@nmr.mgh.harvard.edu > Date: Jeudi 29 décembre 2011, 18h01 > > > The problem is apparently that the Xh.aparc.a2009s.annot > wasn't created. > > Look in scripts/recon-all.log and make sure that the section > "Cortical > Parc 2" is present, and if it is, look for clues as to why > the .annot > wasn't created. > > cheers, > -MH > > On Thu, 2011-12-29 at 16:03 +0000, LAOUCHEDI MAKHLOUF wrote: > > hi everyone > > i run recon-all on 27 subjects using the > 5.1 > > version, and i don't find aparc.a2009s+aseg.mgz neither > > lh.aparc.a2009s.annot so i can't use the command > mri_aparc2aseg > > ( mri_aparc2aseg --s subject --a2009s). what must i do to > have > > aparc.a2009s+aseg.mgz. > > > > thanks > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the > person to whom it is > > addressed. If you believe this e-mail was sent to you in > error and the e-mail > > contains patient information, please contact the Partners > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was > sent to you in error > > but does not contain patient information, please contact the > sender and properly > > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
