Thanks for your response Martin.
From: Martin Reuter [mailto:mreu...@nmr.mgh.harvard.edu]
Sent: Monday, October 20, 2014 12:56 PM
To: Govindarajan, Koushik Athreya
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] adding time points to longitudinal base template
Hi Koushik,
no, I cc
hreya; freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] adding time points to longitudinal base
template
Hi Koushik,
there is a way to add time points without recreating the base:
recon-all -long -addtp -all
This is what the recon-all help says about that:
"If a new timepoint needs t
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] adding time points to longitudinal base template
{Disarmed} {Disarmed}
Hi Koushik,
there seems to be a bug. There's a safety check (that usually makes sense) but
when adding a tp, of course it is not yet contained in the base.
Fix it by:
For Version 5.3 chang
Martin
Reuter
*Sent:* Wednesday, March 19, 2014 11:21 AM
*To:* Govindarajan, Koushik Athreya; freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] adding time points to longitudinal base
template {Disarmed}
Hi Koushik,
What version are you using? Not sure when we added this, maybe in 5.
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Martin Reuter
Sent: Wednesday, March 19, 2014 11:21 AM
To: Govindarajan, Koushik Athreya; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] adding time points to longitudinal base template
{Disarmed}
Hi Koushik,
What version
ailto:mreu...@nmr.mgh.harvard.edu]
Sent: Friday, March 14, 2014 9:31 AM
To: Govindarajan, Koushik Athreya; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] adding time points to longitudinal base template
Hi Koushik,
there is a way to add time points without recreating the base:
recon
edu]
*Sent:* Friday, March 14, 2014 9:31 AM
*To:* Govindarajan, Koushik Athreya; freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] adding time points to longitudinal base
template
Hi Koushik,
there is a way to add time points without recreating the base:
recon-all -long -addtp -al
Thanks Martin, I will try it out.
K
From: Martin Reuter [mailto:mreu...@nmr.mgh.harvard.edu]
Sent: Friday, March 14, 2014 9:31 AM
To: Govindarajan, Koushik Athreya; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] adding time points to longitudinal base template
Hi Koushik,
there is a
Hi Koushik,
there is a way to add time points without recreating the base:
recon-all -long -addtp -all
This is what the recon-all help says about that:
"If a new timepoint needs to be added to a longitudinal run where a base
subject
has already been created (from prior timepoints), then th
