@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Using a clipped image
i forgot to add: dont use the skull-stripped image as input. your's
just gets inserted after -autorecon1 to replace brainmask..mgz
n.
On Thu, 2010-01-28 at 15:59 -0500, Nick Schmansky wrote:
> you could break it apart:
&g
i forgot to add: dont use the skull-stripped image as input. your's
just gets inserted after -autorecon1 to replace brainmask..mgz
n.
On Thu, 2010-01-28 at 15:59 -0500, Nick Schmansky wrote:
> you could break it apart:
>
> recon-all -s subjid -autorecon1 -noskullstrip
>
> cp brainmask.auto.mg
you could break it apart:
recon-all -s subjid -autorecon1 -noskullstrip
cp brainmask.auto.mgz
cp brainmask.auto.mgz brainmask.mgz
recon-all -s subjid -autorecon2 -autorecon3
n.
On Thu, 2010-01-28 at 15:31 -0500, Bruce Fischl wrote:
> Hi Ron,
>
> we do use the talairach for things like esti
Hi Ron,
we do use the talairach for things like estimating icv, so that would
concern me a bit. I don't think there is a straightforward way to insert
the skull stripped image into our stream though. Maybe Nick has a better
idea?
Bruce
On Thu, 28 Jan 2010,
Pierson, Ronald K wrote:
> We hav
